Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0434
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    85   1e-17
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    37   0.003
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    29   0.72 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   1.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.1  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   8.9  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   8.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 45/126 (35%), Positives = 65/126 (51%)
 Frame = +1

Query: 118 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ*XAKPSKTTW 297
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  L G++ ++M K     +  +   
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 298 TTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAIAPLSVVIPAHNTG 477
             +          R  +       +L EVR+  + N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 478 LGPEKT 495
           + P KT
Sbjct: 128 MEPGKT 133



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 497 FLPGLSIPTKISKGTIEIINDVHILKPVTRLS-SEAT 604
           F   L IPTKI++GTIEI +DVH++    ++  SEAT
Sbjct: 135 FFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEAT 171


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
 Frame = +1

Query: 55  KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLX 234
           K  RS   TL++  ++     K+  F  + Q LD +   +I    N+ +  +++IR    
Sbjct: 3   KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61

Query: 235 GSSIVLMEKTQ*XAK-----PSKTTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXL 399
           GS I  M KT+  AK     P +     +       H +   L + S  + ++   ++ +
Sbjct: 62  GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120

Query: 400 ENKVQAPARPGAIAPLSVVIPA 465
           +N     AR GA+AP + VIPA
Sbjct: 121 QNDF---ARAGAVAPFTHVIPA 139


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 280 PSKTTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPA 423
           P + T T  +P R      R + +  S  +NL ++ D  L ++V APA
Sbjct: 561 PDRITTTIEKPERPSRFARRLSSSVASDVDNLSQLHDTDLNSEVSAPA 608


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 216 LLHLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 103
           L+H L  +V G HD +FW L ++L    D  +++  P S V
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 216 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 91
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 216 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 91
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 216 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 91
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 216 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 91
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 553 DDFNSTL*NLGRDRKAWKKESS 488
           +DFN+ +  L  ++KAWK E S
Sbjct: 632 NDFNNKIKALREEKKAWKSEES 653


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 566 ILKPVTRLSSEATFSTCEHSPSHMXV*AGYDLEYL 670
           I KP++    E  F+     PS   +  GY L YL
Sbjct: 157 IEKPISAAPVEDAFAVARRLPSESVISVGYMLRYL 191


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 219 DLLHLLRAHVIGTHDETF-WVLV 154
           DLL +L+  +  THDE+  W++V
Sbjct: 338 DLLSMLKEQITHTHDESLEWIVV 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,779
Number of Sequences: 5004
Number of extensions: 64965
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)