Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0434
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 100 1e-21
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5) 33 0.33
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08) 28 7.2
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 28 7.2
SB_30187| Best HMM Match : ShlB (HMM E-Value=8.7) 28 9.5
SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08) 28 9.5
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 100 bits (240), Expect = 1e-21
Identities = 55/117 (47%), Positives = 66/117 (56%)
Frame = +1
Query: 145 QLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ*XAKPSKTTWTTIQPSRNC 324
Q LDEYPK F+VG DNVGS+QMQ IR SL G VLM K K +
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 325 CHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKT 495
+ + E+L +VR +ENKV APA+ G IAP+ V +PA NTGLGPEKT
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKT 117
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 255 GKNTMXRKAIKDHLDNNPALEKLLPHIKGNVGFVVTR 365
GKNTM RKAI+ HL+NNP LEKLLPHIKGN+GFV T+
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTK 74
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 485 QRRLFLPGLSIPTKISKGTIEIINDVHILKPVTRLSS 595
++ F L+IPTKI++GTIEIINDVH++K +L +
Sbjct: 115 EKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
Length = 696
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 436 IAPLSVVIPA---HNTGLGPEKTLSSRPFYPYQDFKGYY*NHQR 558
++P VV+P H+ LGP+ PY+D + +Y H+R
Sbjct: 478 VSPSPVVVPGQARHSIPLGPQPAYGGSDLLPYEDRRSHYLRHRR 521
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 258 KNTMXRKAIKDHLDNNPALEKLLPHIKGNVGFVVTRGE 371
K T+ RK +K HLDN P L K LP + G + + + G+
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGD 204
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/125 (19%), Positives = 51/125 (40%)
Frame = -3
Query: 512 KGLEERVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNXLSRTSTRFSAGDHEANVALD 333
+G ++ R +++A T+ + P + GA +L ++ L S+ S+ D
Sbjct: 1192 QGSSAVLYESLRHMVYADDTSALHTILPNQFGA-SLLNSLLKSCSSLSSSMDESMGDFHQ 1250
Query: 332 VWQQFLEGWIVVQVVFDGFAXHCVFSMSTILEPXSXXRICCICCEPTLSAPTMKHFGYSS 153
+W++ +V VV + + +L C C P +S +H+ ++
Sbjct: 1251 LWEK-----LVSDVVKEFHSVPVTLLAKNVLAITPFVGTLCECTSPDVSTSLQEHYRFNG 1305
Query: 152 KSWMI 138
+W I
Sbjct: 1306 PAWHI 1310
>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
Length = 970
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 506 LEERVFSGPRPVLWAGMTT 450
+EER+ SGP P++W + T
Sbjct: 862 VEERLASGPEPIIWGRLAT 880
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 467 WAGMTTDNGAMAPGRAGAWTLFSNXL 390
W+ T D PGRA AW+L+S L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_30187| Best HMM Match : ShlB (HMM E-Value=8.7)
Length = 538
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 275 QSHQRPPGQQSSPRETVATHQGQRWLRGHPRRTSLRSVT 391
Q Q PPG+Q SP + + WLR +TS+ ++T
Sbjct: 214 QGLQGPPGEQGSP----GSKRDDSWLRFQSSKTSMTALT 248
>SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)
Length = 313
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 358 SPAENLVEVRDNXLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTLSS 504
SP+ + VE DN ++ +APA G +S V TG K+ S+
Sbjct: 5 SPSISRVEPSDNEIKLNWEAPASDGGSPVVSYVASVQRTGKSTWKSCST 53
>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 407 KSKLQLVLVPLPHCQSSFPPTTPA-SVQRRLFLPGLSIP 520
K+ + VL HC SFP T PA + +++P + +P
Sbjct: 474 KNNIYQVLQDAAHCDLSFPVTKPARPIPGLVYIPMVRVP 512
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,599,261
Number of Sequences: 59808
Number of extensions: 527771
Number of successful extensions: 1243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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