Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0434
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   119   2e-27
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC025726-30|AAK73930.1|  324|Caenorhabditis elegans Hypothetical...    29   4.7  
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    28   8.3  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  119 bits (287), Expect = 2e-27
 Identities = 59/135 (43%), Positives = 81/135 (60%)
 Frame = +1

Query: 91  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ* 270
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++ G + +LM K   
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 271 XAKPSKTTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAIAPLS 450
             K  +                   +      E+L E+R   LEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 451 VVIPAHNTGLGPEKT 495
           V +P  NTG+GPEKT
Sbjct: 121 VKLPPQNTGMGPEKT 135



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = +3

Query: 255 GKNTMXRKAIKDHLDNNPALEKLLPHIKGNVGFVVTR 365
           GKNTM RKA++ HL  NP+LEKLLPHI  NVGFV T+
Sbjct: 56  GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTK 92



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 446 CQSSFPP-TTPASVQRRLFLPGLSIPTKISKGTIEIINDVHILK 574
           C    PP  T    ++  F   L IPTKI++GTIEI+NDVH++K
Sbjct: 119 CDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIK 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 46  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLD---EYPKCFIVGADNVGSQQMQQ 216
           L+ K   S ++ +SR+ +EDK +  SN+++K   L++   +Y   +    + +GS    Q
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIKWQLLMEPAIDYSAQYEQFKNYIGSNAYYQ 215

Query: 217 IRXSLXGSSI 246
                 GSS+
Sbjct: 216 KCAYFYGSSM 225


>AC025726-30|AAK73930.1|  324|Caenorhabditis elegans Hypothetical
           protein Y71G12B.4 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 621 CSHVEKVASELNLVTGFKMCTSLMISIVPFEILVGIERPGRKSLLWTEAGVVGGNDD 451
           C+ +E ++ + N +TGFK  T+         +L G E PG   L+W + G +   DD
Sbjct: 41  CTSLE-LSDQENYLTGFKALTTK--GTAHHILLFGCEEPGSDELVW-DCGEMNKPDD 93


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 296 GQQSSPRETVATHQGQRWLRG---HPR-RTSLRSVTXCWRTKSKLQLVLVPLPH 445
           GQQS  R+      G RWLRG   + R +   + V    R  SKL L+LV  PH
Sbjct: 204 GQQSGDRK------GARWLRGLRDYDRGQDENQEVELIMRMTSKLHLLLVDSPH 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,729,478
Number of Sequences: 27780
Number of extensions: 377535
Number of successful extensions: 1113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)