Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0434
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 PPSQHVNILHLIXLCKQDMIWN 665
           P  QH N+  L+ +C+QD+I N
Sbjct: 317 PELQH-NLNILVDMCEQDIIQN 337


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 331 CGNSFSRAGLLSRWSLMALRIIVFF 257
           CG  +   GLLS   L+   I V+F
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYF 226


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 331 CGNSFSRAGLLSRWSLMALRIIVFF 257
           CG  +   GLLS   L+   I V+F
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYF 102


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 115 WKSNYFVKIIQLLDEYP 165
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 275 QSHQRPPGQQSSPRETVATHQGQRWLR 355
           Q H RP  QQ   ++     Q +R LR
Sbjct: 157 QDHHRPYQQQQQQQQRQQQRQEERRLR 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,444
Number of Sequences: 438
Number of extensions: 4553
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)