Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0434
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    81   6e-16
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    80   2e-15
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       78   6e-15
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family...    31   1.1  
At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putat...    29   3.4  
At2g02690.1 68415.m00208 hypothetical protein                          28   5.9  
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00...    28   7.7  

>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
 Frame = +1

Query: 91  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ* 270
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  L G S+VLM K   
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 271 XAKP----SKTTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAI 438
             +     S+ T  T     N     +  +       +L EV +   + KV APAR G +
Sbjct: 61  MKRSVRIHSENTGNT--AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLV 118

Query: 439 APLSVVIPAHNTGLGPEKT 495
           AP+ VV+   NTGL P +T
Sbjct: 119 APIDVVVQPGNTGLDPSQT 137



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
 Frame = +3

Query: 255 GKNTMXRKAIKDHLDN--NPALEKLLPHIKGNVGFVVTRGE 371
           GKNTM +++++ H +N  N A+  LLP ++GNVG + T+G+
Sbjct: 56  GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGD 96



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461 PPTTPASVQRRLFLPGLSIPTKISKGTIEIINDVHILKPVTRL-SSEA 601
           P  T     +  F   L+IPTKI+KGT+EII  V ++K   ++ SSEA
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEA 174


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
 Frame = +1

Query: 91  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ* 270
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  L G S+VLM K   
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 271 XAKP----SKTTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAI 438
             +     S+ +  T     N     +  +       +L EV +   + KV APAR G +
Sbjct: 61  MKRSVRIHSENSGNT--AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLV 118

Query: 439 APLSVVIPAHNTGLGPEKT 495
           AP+ VV+   NTGL P +T
Sbjct: 119 APIDVVVQPGNTGLDPSQT 137



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
 Frame = +3

Query: 255 GKNTMXRKAIKDHLDN--NPALEKLLPHIKGNVGFVVTRGE 371
           GKNTM +++++ H +N  N A+  LLP ++GNVG + T+G+
Sbjct: 56  GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGD 96



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461 PPTTPASVQRRLFLPGLSIPTKISKGTIEIINDVHILKPVTRL-SSEA 601
           P  T     +  F   L+IPTKI+KGT+EII  V ++K   ++ SSEA
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEA 174


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
 Frame = +1

Query: 106 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLXGSSIVLMEKTQ*XAKPS 285
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  L G S+VLM K     +  
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 286 K--TTWTTIQPSRNCCHTSRATLASWSPAENLVEVRDNXLENKVQAPARPGAIAPLSVVI 459
           +     T  Q   +     +  +       +L EV +   + KV APAR G +AP+ VV+
Sbjct: 67  RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126

Query: 460 PAHNTGLGPEKT 495
              NTGL P +T
Sbjct: 127 QPGNTGLDPSQT 138



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = +3

Query: 255 GKNTMXRKAIKDHLDN--NPALEKLLPHIKGNVGFVVTRGE 371
           GKNTM +++++ H D   N A   LLP ++GNVG + T+G+
Sbjct: 57  GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGD 97



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461 PPTTPASVQRRLFLPGLSIPTKISKGTIEIINDVHILKPVTRL-SSEA 601
           P  T     +  F   L+IPTKI+KGT+EII  V ++K   ++ SSEA
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEA 175


>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 418

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 413 WTLFSNX-LSRTSTRFSAGDHEANVALDVWQQFLEGWIVVQVVFDGFA 273
           W  +S   ++   T F  G+HEA+  L  W+ +  GW    + F GFA
Sbjct: 65  WKYYSGQEVAPIPTIFIGGNHEASNYL--WELYYGGWAATNIYFLGFA 110


>At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putative
           similar to serine/threonine/tyrosine kinase [Arachis
           hypogaea] gi|13124865|gb|AAK11734
          Length = 411

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 609 QHVNILHLIXLCKQDMIWNICTE-SXSTEXRQF 704
           +H NI+  I  C++ M+W I TE +     RQF
Sbjct: 187 KHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQF 219


>At2g02690.1 68415.m00208 hypothetical protein
          Length = 623

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 646 LHXHMRWRMFTC*EGGFRTQPCHRLQDVY 560
           LH H   + FT  EGGF  Q C+R+ + +
Sbjct: 428 LHPHPLIQKFTHVEGGFSCQACNRMSNSF 456


>At3g17280.1 68416.m02209 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 386

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 308 WIVVQVVFDG---FAXHCVFSMSTILEPXSXXRICCICCEPTLSAPTMKHFGYSSKSWMI 138
           WI+ +  +D    +A  C    S+ L      R    CC+     P  + + +SS SW +
Sbjct: 128 WIIPRTRYDSDDIYALGCGDDKSSSLHSYKILR----CCDDNQKKPVSEIYDFSSSSWRV 183

Query: 137 L 135
           L
Sbjct: 184 L 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,989,572
Number of Sequences: 28952
Number of extensions: 363209
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)