Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0433
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.60 
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   4.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.2  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   9.7  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +3

Query: 75  RNQRSHHCLHRELK--AYTKQTIPSPXRDSRSCRQY*NVKQSLKRRRCTVKNRGIKH*HS 248
           R  R HH  HRE K   + +   PS        R     K+ L+ ++  V+N   ++  S
Sbjct: 26  RRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLEVKKLPVEN---EYFDS 82

Query: 249 SFEDSEAVRCSGDCFQNDHRGDGLRFSRFTYFGVGRRDPQEPKGR*TN 392
            F  + ++  S D  QN+   + L+   F  F  G R  +EP  R +N
Sbjct: 83  KFASASSMPSSKDNPQNNDFTNSLQGLDFGTF--GSRIQREPIDRKSN 128


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 499 NKSQSEGRRQLVEARRMGRIVSSTRXRCD 585
           N+SQ +  R+ V    MGR  S  + RCD
Sbjct: 506 NESQKDRERKQVHPVEMGRNSSEKKPRCD 534


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 335  KSAKSKSIPSV-----VVLKAVTRTSNCFTVFKTRVLMLYPPIFY 216
            KS + K+IP       V L    R+ N   +F+ ++L  +PP+FY
Sbjct: 2148 KSYRQKNIPISYQEIKVDLDFALRSPNPGDIFEKKILPKFPPVFY 2192


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 179 KRQAEFKAAALHCKKSGDK 235
           KR ++FK A L  KKSG+K
Sbjct: 315 KRLSKFKQAKLETKKSGNK 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,516
Number of Sequences: 5004
Number of extensions: 42804
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)