Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0433
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.49 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.64 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 401 PENQHQRRLQPPRTDHRLDGGRSFTTEASLFSATR 505
           PE  ++RR  PP+ D R    +    E+ +F  TR
Sbjct: 243 PERHYERRATPPQPD-RTSKDQGTIGESEVFDTTR 276


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 298 TTTEGMDFDLADLPTLESVAATLKSP 375
           TT + MD D+ D  T  S+   +K+P
Sbjct: 567 TTDQSMDIDVCDNQTYTSLQMAMKNP 592


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 329 AKSK-SIPSVVVLKAVTRTSNCFTVFKTRVLMLY 231
           AKS+ S+P V  LKAV    +  TVF    LM Y
Sbjct: 292 AKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEY 325


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 585 VAPXPGTAYNAPHTTSFDELPSSF 514
           VAP PG + N+     +D+L S++
Sbjct: 9   VAPFPGASANSEAKRLYDDLLSNY 32


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 338 GKSAKSKSIPSVVVLKAVTRTSNC 267
           GK   S S  ++ VL   TRT NC
Sbjct: 856 GKYMVSPSNDALFVLNGETRTINC 879


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,455
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)