Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0433
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 33 0.22
At5g44330.1 68418.m05428 male sterility MS5 family protein simil... 29 2.8
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 4.8
At1g07480.2 68414.m00801 transcription factor IIA large subunit ... 28 4.8
At1g07480.1 68414.m00800 transcription factor IIA large subunit ... 28 4.8
At1g07470.1 68414.m00797 transcription factor IIA large subunit,... 28 4.8
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 28 6.4
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 28 6.4
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 28 6.4
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 32.7 bits (71), Expect = 0.22
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +3
Query: 150 RDSRSCRQY*NVKQSLKRRRCTVKNRGIKH*HSSFEDSEAVRCSGDCFQNDHRGDGL-RF 326
R+++ R+ + ++ +KR+R + S DSE+ S +++ DG R
Sbjct: 206 REAKETRKKESNEKRIKRKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRK 265
Query: 327 SRFTYFGVGRRDPQEPKGR*TNAKFRRTNTSVDSSLRGLITASTVEEALRQRL 485
+ T GRR ++ KGR K R +S ++S+ ++ R+RL
Sbjct: 266 RKSTTRHKGRRGERKSKGRSGKKKARPDRKPSTNSSSDTESSSSSDDGYRRRL 318
>At5g44330.1 68418.m05428 male sterility MS5 family protein similar
to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
contains Pfam profile PF00515 TPR Domain
Length = 469
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 75 RNQRSHHCLHRELKAYTKQTIPSPXRDSRSCRQY*NVKQSL-KRRRCTVKNRGIKH*HSS 251
R +R+H + L KQ++ + ++ C+ + + L +R + TV ++ SS
Sbjct: 229 RMERTHEA--KSLLEDVKQSLGNQWKNEPFCKSFERATEMLAEREQATVADKPEDLLTSS 286
Query: 252 FEDSEAVRCSG 284
F D+ + RCSG
Sbjct: 287 FSDNFSSRCSG 297
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = +3
Query: 150 RDSRSCRQY*NVKQSLKRRRCTVKNRGIKH*HSSFEDSEAVRCSGDCFQNDHRGDGL-RF 326
R+++ R+ + ++ +KR+R + S DSE+ S +++ DG R
Sbjct: 206 REAKETRKKESNEKRIKRKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRK 265
Query: 327 SRFTYFGVGRRDPQEPKGR*TNAKFR-----RTNTSVDS 428
+ T GRR ++ KGR K R TN+S D+
Sbjct: 266 RKSTTRHKGRRGERKSKGRSGKKKARPDRKPSTNSSSDT 304
>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 639 DTPAAWQLVPGTPSRXRAVAPXPGTAYNA 553
+TP A L P TP + P PGTA N+
Sbjct: 87 ETPTAEMLFPPTPLQTPLPTPLPGTADNS 115
>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 639 DTPAAWQLVPGTPSRXRAVAPXPGTAYNA 553
+TP A L P TP + P PGTA N+
Sbjct: 87 ETPTAEMLFPPTPLQTPLPTPLPGTADNS 115
>At1g07470.1 68414.m00797 transcription factor IIA large subunit,
putative / TFIIA large subunit, putative nearly
identical to transcription factor IIA large subunit
GI:2826884 from [Arabidopsis thaliana]; contains Pfam
profile: PF03153 transcription factor IIA, alpha/beta
subunit
Length = 375
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 639 DTPAAWQLVPGTPSRXRAVAPXPGTAYNA 553
+TP A L P TP + P PGTA N+
Sbjct: 87 ETPTAEMLFPPTPLQTPLPTPLPGTADNS 115
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 45 QXRKNHRPVYRNQRSHHCLHRELKAYTKQTIP 140
Q R+NHRP RN HR + AY +P
Sbjct: 366 QSRENHRPNQRNYNVFQQQHRPVMAYPVWGLP 397
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 45 QXRKNHRPVYRNQRSHHCLHRELKAYTKQTIP 140
Q R+NHRP RN HR + AY +P
Sbjct: 366 QSRENHRPNQRNYNVFQQQHRPVMAYPVWGLP 397
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 45 QXRKNHRPVYRNQRSHHCLHRELKAYTKQTIP 140
Q R+NHRP RN HR + AY +P
Sbjct: 366 QSRENHRPNQRNYNVFQQQHRPVMAYPVWGLP 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,785
Number of Sequences: 28952
Number of extensions: 247782
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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