Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0432
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    31   0.14 
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    31   0.19 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    28   1.3  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    28   1.3  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   2.3  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.3  

>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 488 PRYCVPV-ERPGHVLIXKWNPLGVVGIITAFNFP--VAVFGMDSAIA 619
           P   VP+   PG     K  P GV+G+IT +NFP  +A++ +  AIA
Sbjct: 142 PTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIA 188


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 515 PGHVLIXKWNPLGVVGIITAFNFPVAV 595
           P + +I    P+GVVGIIT +NFP A+
Sbjct: 149 PQNRIITIKQPVGVVGIITPWNFPAAM 175


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 604 HPKNSHRKVEGCYDANNTKRVPFXDQDVSGTLDG 503
           H K+  R+V   YD N+    PF D+  S T  G
Sbjct: 622 HQKSQTRRVMEQYDRNSWNPSPFSDESNSNTFSG 655


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 527 LIXKWNPLGVVGIITAFNFPVAVFGMDSAIAXVLWVTQLF 646
           LI    P+GV  +IT +NFP A+       A     T +F
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIF 187


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 RGEVVRQIGDALRENLQPLGKLVSLXMGKILPEAIGEV 437
           RG  + ++ D + +NL+ L  + +L  GK +  A G+V
Sbjct: 87  RGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 122 LKDLXLKENNVGVFNGKWKANGEVIKSYSPANGKVIAEVQA 244
           L  L  KEN+ GV +  W +NG  I +     G +I + Q+
Sbjct: 221 LYKLLPKENHSGVTDISWSSNGMYIAASFKKGGILIWDTQS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,345
Number of Sequences: 5004
Number of extensions: 55414
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)