Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0432
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 101 9e-22
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 31 1.0
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 31 1.0
12_01_0725 + 6428572-6428817 31 1.4
07_01_0355 + 2597592-2598280,2599150-2599426 29 5.5
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 5.5
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 29 5.5
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 29 5.5
10_08_0674 + 19788198-19789817 28 7.3
03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887... 28 7.3
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 7.3
03_02_0918 + 12381662-12383118,12383249-12384707 28 9.6
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 9.6
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 28 9.6
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 101 bits (241), Expect = 9e-22
Identities = 55/108 (50%), Positives = 65/108 (60%)
Frame = +3
Query: 309 LPAPARGEVVRQIGDALRENLQPLGKLVSLXMGKILPEAIGEVIEYIHVCDLALGLSRTL 488
+PAP RGE+VRQIGDALR L LG+LVSL MGKILPE IGEV E I +CD A+GLSR L
Sbjct: 101 IPAPKRGEIVRQIGDALRAKLHHLGRLVSLEMGKILPEGIGEVQEIIDMCDYAVGLSRQL 160
Query: 489 PGTVFPSSVPDTS*SXNGTRLVLLAS*QPSTFLWLFLGWIALSLXFCG 632
G++ PS P+ L ++ F LGW A CG
Sbjct: 161 NGSIIPSERPNHMMMEVWNPLGVVGVITAFNFPCAVLGWNACIALVCG 208
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 110 KYSFLKDLXLKENNVGVFN-GKWKANGEVIKSYSPANGK 223
++ FL +L L N G F G W +G V+ S +P N +
Sbjct: 8 EHQFLAELGLAPRNPGSFACGAWGGSGPVVTSTNPTNNQ 46
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 500 VPVERPGHVLIXKWNPLGVVGIITAFNFPVAVF 598
VP + P HV + P+GV G I +NFP+ +F
Sbjct: 192 VPADGPHHVQVLH-EPIGVAGQIIPWNFPLLMF 223
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 500 VPVERPGHVLIXKWNPLGVVGIITAFNFPVAVF 598
VP + P HV + P+GV G I +NFP+ +F
Sbjct: 196 VPADGPHHVQVLH-EPIGVAGQIIPWNFPLLMF 227
>12_01_0725 + 6428572-6428817
Length = 81
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 466 LWVCPAHSPVLCSRRASRTRPDRXMEPAWCCWHHNSLQLSCGC 594
++V +P +RRA + RP +EP+ CC H S ++ C
Sbjct: 30 VYVHAVTTPPSQNRRALQVRPSPVVEPSGCCSGHRSEAVASWC 72
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 234 SAITLPFAGL*DLITSPFAFHFPLKTPTLFSFKXKSFKNEYFGSSMRKAVDALR 73
S I+L FAG+ L+ + A F TP +K S+ +F +S+ DA++
Sbjct: 249 STISLGFAGMQVLVCTFVAVRFEGATPAEAIYKNLSYLEVFFKTSLLAVGDAVK 302
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 555 TPSGFHXSIRTCPGRSTGTQYRGVCG 478
TP GF TCP ++ G Y G CG
Sbjct: 304 TPGGFTC---TCPDKTIGNAYNGTCG 326
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 524 VLIXKWNPLGVVGIITAFNFPVAV 595
+L+ K P+GVVG +T +NFP+A+
Sbjct: 211 LLVLK-QPVGVVGAVTPWNFPLAM 233
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 545 PLGVVGIITAFNFPVAVFGMDSAIAXVLWVTQLFXXPSXKQTP 673
P+GVVG+I +NFP +F + + A T + P+ +QTP
Sbjct: 164 PIGVVGVIIPWNFPTMMFFLKVSPALAAGCT-IVVKPA-EQTP 204
>10_08_0674 + 19788198-19789817
Length = 539
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 378 LGKLVSLXM-GKILPEAIGEVIEYIHVCDLALGLSRTLPGTVFPSSVPDTS*SXNGTRLV 554
LG+L L + G L + Y + LA+G+ V ++P + L+
Sbjct: 81 LGRLGELALAGGSLAIGFANITGYSVLSGLAMGMEPVCGQAVGAGNLPLVGATMQRMVLL 140
Query: 555 LLAS*QPSTFLWLFLGWIALSLXFCG 632
LLA P FLW W+ L CG
Sbjct: 141 LLAVSVPVAFLW---AWMEPLLLLCG 163
>03_02_0878 +
12088119-12088233,12088511-12088608,12088689-12088795,
12088900-12088974,12089053-12089124,12089221-12089382,
12089476-12089550,12089635-12089706,12089813-12089884,
12090150-12090224,12090329-12090400,12090491-12090625,
12090712-12091187,12091270-12091779,12091876-12092111,
12092200-12092712
Length = 954
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 275 CGTGSVACVGGTARACKRRGR*TNRRCSKGKPSATWKAS 391
CG VA VG A +R R R G P A+WK S
Sbjct: 554 CGVLVVALVGAAVYALVQRRRAQKAREELGGPFASWKRS 592
>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 158 LQHCFLLNXNPLKTSTSGPL*GKLLMRCEP 69
LQH F+ N +PL+ S S PL C+P
Sbjct: 1191 LQHSFIRNASPLEKSLSDPLLQLSTTSCKP 1220
>03_02_0918 + 12381662-12383118,12383249-12384707
Length = 971
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 414 LPEAIGEVIEYIHVCDLALGLSRTLPGTVFPSSVPDTS*SXN 539
LPE+IG +HV L+ TLP VF S V S S N
Sbjct: 331 LPESIGGCKSLVHVDVSWNSLTGTLPSWVFASGVQWVSVSDN 372
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 555 TPSGFHXSIRTCPGRSTGTQYRGVC 481
TP GF S CP ++TG Y G C
Sbjct: 321 TPGGFRCS---CPDKTTGNAYFGTC 342
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 512 RPGHVLIXKWNPLGVVGIITAFNFPVAVFGMDSAIAXVLWVTQLFXXPSXKQTP 673
RP H K P+GVVG I +N+P +F ++ A T + P+ +QTP
Sbjct: 146 RPCHGYTLK-EPVGVVGHIVPWNYPTTMFFFKASPALAAGCT-MVVKPA-EQTP 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,789
Number of Sequences: 37544
Number of extensions: 387221
Number of successful extensions: 1094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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