Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0432
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 309 VPPTHATLPVPHWR 268
           VPP ++ L  PHWR
Sbjct: 34  VPPEYSDLVRPHWR 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 636 VTHKTIAIALSIPKTATGKLKAVMMPTTPSGFHXSIRTCPGRSTGTQYRGVCGTDPKLSH 457
           V  + I I++S P T T   K   +  TPS      +T    S G  +  +C T P+ +H
Sbjct: 334 VKREKIKISVSYPSTETLNTKCNTLERTPS---KCSQTSVHYSNGQTHSQLCPT-PRSTH 389

Query: 456 TR 451
            +
Sbjct: 390 LK 391


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 309 VPPTHATLPVPHWR 268
           VPP ++ L  PHWR
Sbjct: 34  VPPEYSDLVHPHWR 47


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 516 GRSTGTQYRGVCGTDPKLSHTREYTRSLRR 427
           GR+ G +YRG     PK+ H      S+ R
Sbjct: 423 GRNAGLRYRGPKQNKPKVLHAIRRGASILR 452


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 34  SCVIASLY*STNGSQRINSFPHRGPEVLVFKGFXFKRKQC 153
           SCVIAS + +   ++  N  P R   +   K    +R +C
Sbjct: 222 SCVIASRHRNLEATESENVRPRRNVLIERAKSIRARRTEC 261


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +2

Query: 494 YCV---PVERPGHVLIXKWNPLGVVGII 568
           YC+   P+ERP H ++  +  L +V  I
Sbjct: 325 YCISGAPIERPDHAVLCVYMGLSMVEAI 352


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 276 HWRTPHNRALP 244
           HW+ PHN   P
Sbjct: 302 HWQLPHNSTNP 312


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 327 LLQARAVPPTHATLPV 280
           LL A  +PPT  T+P+
Sbjct: 283 LLLAEIIPPTSLTVPL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,565
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)