Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0432
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative / anti...    93   2e-19
At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative / anti...    93   2e-19
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S...    38   0.006
At3g19230.1 68416.m02440 leucine-rich repeat family protein cont...    30   1.5  
At2g45770.1 68415.m05693 signal recognition particle receptor pr...    29   2.6  
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa...    29   4.6  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    28   8.0  

>At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative /
           antiquitin, putative strong similarity to SP|Q41247
           Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
           (Antiquitin 1) (Brassica
           turgor-responsive/drought-induced gene 26 protein)
           (Btg-26) {Brassica napus}; similar to turgor-responsive
           protein 26G (aldehyde dehydrogenase family 7 member A1)
           [Pisum sativum] SWISS-PROT:P25795
          Length = 508

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 52/106 (49%), Positives = 62/106 (58%)
 Frame = +3

Query: 315 APARGEVVRQIGDALRENLQPLGKLVSLXMGKILPEAIGEVIEYIHVCDLALGLSRTLPG 494
           AP RG++VRQIGDALR  L  LG+L+SL MGKIL E IGEV E I +CD A+GLSR L G
Sbjct: 77  APKRGDIVRQIGDALRSKLDYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGLSRQLNG 136

Query: 495 TVFPSSVPDTS*SXNGTRLVLLAS*QPSTFLWLFLGWIALSLXFCG 632
           +V PS  P+         L ++       F    LGW A     CG
Sbjct: 137 SVIPSERPNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIALVCG 182



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
 Frame = +2

Query: 110 KYSFLKDLXLKENNVGVF-NGKWKANGEVIKSYSPANGKVIAEVQAGSAR--L*GVRQCG 280
           +Y FL ++ L  +N+G +  GKW+ANG ++ + +PAN + IA+V   S      G++ C 
Sbjct: 7   EYEFLSEIGLTSHNLGSYVAGKWQANGPLVSTLNPANNQPIAQVVEASLEDYEQGLKACE 66

Query: 281 TGSVACVGGTARACKRRGR*TNR--RCSKGKPSATWKASVIXNG*NPAXXXXXXXXXXXX 454
             +   +  TA    +RG    +     + K     +   +  G   A            
Sbjct: 67  EAAKIWMQVTA---PKRGDIVRQIGDALRSKLDYLGRLLSLEMGKILAEGIGEVQEVIDM 123

Query: 455 XXLSFGSVPHTPRYCVPVERPGHVLIXKWNPLGVVGIITAFNFPVAVFGMDSAIAXV 625
              + G         +P ERP H+++  WNPLG+VG+ITAFNFP AV G ++ IA V
Sbjct: 124 CDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIALV 180


>At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative /
           antiquitin, putative strong similarity to SP|Q41247
           Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
           (Antiquitin 1) (Brassica
           turgor-responsive/drought-induced gene 26 protein)
           (Btg-26) {Brassica napus}; similar to turgor-responsive
           protein 26G (aldehyde dehydrogenase family 7 member A1)
           [Pisum sativum] SWISS-PROT:P25795
          Length = 508

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 52/106 (49%), Positives = 62/106 (58%)
 Frame = +3

Query: 315 APARGEVVRQIGDALRENLQPLGKLVSLXMGKILPEAIGEVIEYIHVCDLALGLSRTLPG 494
           AP RG++VRQIGDALR  L  LG+L+SL MGKIL E IGEV E I +CD A+GLSR L G
Sbjct: 77  APKRGDIVRQIGDALRSKLDYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGLSRQLNG 136

Query: 495 TVFPSSVPDTS*SXNGTRLVLLAS*QPSTFLWLFLGWIALSLXFCG 632
           +V PS  P+         L ++       F    LGW A     CG
Sbjct: 137 SVIPSERPNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIALVCG 182



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
 Frame = +2

Query: 110 KYSFLKDLXLKENNVGVF-NGKWKANGEVIKSYSPANGKVIAEVQAGSAR--L*GVRQCG 280
           +Y FL ++ L  +N+G +  GKW+ANG ++ + +PAN + IA+V   S      G++ C 
Sbjct: 7   EYEFLSEIGLTSHNLGSYVAGKWQANGPLVSTLNPANNQPIAQVVEASLEDYEQGLKACE 66

Query: 281 TGSVACVGGTARACKRRGR*TNR--RCSKGKPSATWKASVIXNG*NPAXXXXXXXXXXXX 454
             +   +  TA    +RG    +     + K     +   +  G   A            
Sbjct: 67  EAAKIWMQVTA---PKRGDIVRQIGDALRSKLDYLGRLLSLEMGKILAEGIGEVQEVIDM 123

Query: 455 XXLSFGSVPHTPRYCVPVERPGHVLIXKWNPLGVVGIITAFNFPVAVFGMDSAIAXV 625
              + G         +P ERP H+++  WNPLG+VG+ITAFNFP AV G ++ IA V
Sbjct: 124 CDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIALV 180


>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
           (SSADH1) similar to succinate-semialdehyde dehydrogenase
           [NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
           identical to succinic semialdehyde dehydrogenase mRNA,
           nuclear gene encoding mitochondrial protein GI:6684441;
           contains TIGRfam profile TIGR01780:succinic semialdehyde
           dehydrogenase; contains Pfam profile PF00171: aldehyde
           dehydrogenase (NAD) family protein
          Length = 528

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +3

Query: 309 LPAPARGEVVRQIGDALRENLQPLGKLVSLXMGKILPEAIGEVIEYIHVCDLALGLSRTL 488
           L A  R +V+R+  D L  + + LG+L++L  GK L EAIGEV       +     ++ +
Sbjct: 109 LTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRV 168

Query: 489 PGTVFPSSVPD 521
            G + P ++ D
Sbjct: 169 YGDIIPPNLSD 179



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 524 VLIXKWNPLGVVGIITAFNFPVAV 595
           +L+ K  P+GVVG IT +NFP+A+
Sbjct: 182 LLVLK-QPVGVVGAITPWNFPLAM 204


>At3g19230.1 68416.m02440 leucine-rich repeat family protein
           contains Pfam profile:PF00560 LRR:Leucine Rich Repeat
           domains; similar to light repressible receptor protein
           kinase (GI:1321686)[Arabidopsis thaliana]
          Length = 519

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 89  AFLIEDPKYSFLKDLXLKENNVGVFNGKWKANGEVIKSYSPA 214
           AF +     SFL+ L +  N V V++G+W  +G+   + +PA
Sbjct: 289 AFDVSVNGLSFLRKLNVSTNGVMVYSGQWPLSGQTQITLTPA 330


>At2g45770.1 68415.m05693 signal recognition particle receptor
           protein, chloroplast (FTSY) similar to Cell division
           protein ftsY homolog (SP:O67066) {Aquifex aeolicus};
           contains Pfam PF00448: SRP54-type protein, GTPase domain
           contains TIGRFAM TIGR00064: signal recognition
           particle-docking protein FtsY contains Pfam PF02881:
           SRP54-type protein, helical bundle domain; identical to
           cDNA chloroplast FtsY homolog GI:4583547
          Length = 366

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 317 RGQFRPRMPRFLCRTG 270
           RG+FRPRM RF C  G
Sbjct: 29  RGEFRPRMTRFRCSAG 44


>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
           family protein / pentatricopeptide (PPR)
           repeat-containing protein contains Pfam domains PF01535:
           PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 1208

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/95 (21%), Positives = 39/95 (41%)
 Frame = +1

Query: 70  GSQRINSFPHRGPEVLVFKGFXFKRKQCWSFQRKMESKRRGN*VL*SGKWQSDSRSASXQ 249
           G +   S  ++ P     +   ++R   W   RK+  +RR   +   G   S+ R    +
Sbjct: 510 GEEEEESEGNQNPNFFSIQPKTYQRTWIWRDMRKIRRRRRFVVLFVGGSSSSEKREGEKK 569

Query: 250 RTIMRRAPVRHRKRGMRGRNCPRLQEARSLDKSEM 354
               ++    +++R  +  N P   E +S  KSE+
Sbjct: 570 SFREKKGEEGNKERERKFSNSPVKLELKSPAKSEL 604


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 545 PLGVVGIITAFNFPV 589
           PLGVVG+IT +N+P+
Sbjct: 151 PLGVVGLITPWNYPL 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,941
Number of Sequences: 28952
Number of extensions: 300877
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)