Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0431
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                  41   6e-04
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)                  41   6e-04
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +1

Query: 181 TPELQXELKKXAQAIVAPAKGILRRERXQPVTMGKRL 291
           TPEL+ ELK+ A+AIVA  KGIL  +     TMGKRL
Sbjct: 6   TPELKAELKRIAEAIVADGKGILAADE-STGTMGKRL 41


>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 304

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = +1

Query: 181 TPELQXELKKXAQAIVAPAKGILRRERXQPVTMGKRL 291
           TPEL+ ELK+ A+AIVA  KGIL  +     TMGKRL
Sbjct: 6   TPELKAELKRIAEAIVADGKGILAADE-STGTMGKRL 41


>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 336 TTNGSPLLFSTPMSWQTLS 280
           TT G+     TPM+WQTL+
Sbjct: 183 TTRGTSTAIPTPMTWQTLA 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,126
Number of Sequences: 59808
Number of extensions: 182048
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)