Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0430
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   4.4  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.4  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   4.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.8  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 98  SDSKLEDDLYNSILVADYD--NAVEKSXQIYEDKKSEVITNVVNKLIRN--NKMNCRXTP 265
           ++ KL   L N+I++      N   K     + KKS+ + N VNK+ +N  N  + R   
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQA 198

Query: 266 TSSGCKA 286
              G KA
Sbjct: 199 REQGSKA 205


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 75  YMPTEPQSPTPNSKTIFTTASSLPITTMP 161
           YMP  P +P PN+  IF   +  P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 671 VHERTKRXLSXFSGLQRSIGPFKTFDAVDPVGHV--VLGRGCFN 546
           +H R    +  F G+  +   +K  D+ +P+     +LG  CFN
Sbjct: 478 IHTRMSTQIVYFKGMPYNEHNYKELDSFEPITKEAWMLGNSCFN 521


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 510 VNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKGPN*PLQPAKVRQXT 653
           V+ +RN+ LTL    + T N +   +  +   +    PL+P K    T
Sbjct: 184 VSAERNELLTLYATLSTTNNSLDSSIRKIIRMQSFRGPLEPFKYSSTT 231


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 492 QGLLQDVNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKGPN*PLQPAKVRQ 647
           Q L +DVN   N  +   VK+T   +   +  NSV G K P  P +  K  +
Sbjct: 120 QVLNKDVNNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEE 171


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 495 LVVXPXRNELPADFXTRLXLAIAVGKSAIVVAVIXQRQSKTXALVHQLNVVFGENKCEL 319
           L + P  +++PAD   ++  +   G   +VVA      ++T   VH ++ V     C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVAT---NIAETSLTVHGISYVVDTGYCKL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,342
Number of Sequences: 5004
Number of extensions: 33599
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)