Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0430
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953...    29   3.5  
05_07_0165 + 28107093-28108457                                         29   4.6  

>02_02_0535 -
           11292509-11294679,11294971-11295040,11295268-11295324,
           11298629-11298789,11299123-11299156
          Length = 830

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 519 QRNQYLTLSVKTTPTQNHMAYGVNS 593
           QR Q L+ S +T P  NH ++G N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814


>05_07_0165 + 28107093-28108457
          Length = 454

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 11  TRPDAQKMKTVQVILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKSXQIYED 190
           T    ++  + +V++  + + +     S S S  + D+Y              S Q  ED
Sbjct: 349 TTATVRRFSSTKVVIMSWDSKICLPVASSSLSSFQWDIYAGYRPTLLSPLTFASGQHEED 408

Query: 191 -KKSEVITNVVNKLIRNNK-MNCRXTPTSSGC-KAPRI 295
             K ++    + + +R+ K   CR +PTS+GC  A RI
Sbjct: 409 DNKCDLFIRSLLRTLRSQKSQKCRPSPTSAGCTNAKRI 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,926
Number of Sequences: 37544
Number of extensions: 216919
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)