Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0430
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 5   FGTRPDAQKMKTVQVILCLFVASLYANGTSVSD--SKLED--DLYNSILVADYDNAVEKS 172
           FG  PD   M  ++ ++ LF+ ++ + G +V+     L++  D YN ILV +Y    E+ 
Sbjct: 401 FGGSPDVLMMLKMKKVILLFILTMKSYGYAVAPLYELLQNFRDQYNEILVKEYCAQFERD 460

Query: 173 XQ 178
            +
Sbjct: 461 LE 462


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 65  VASLYANGTSVSDSKLEDDLYNSILVADYDNAVE---KSXQIYEDKKSEV 205
           +  L  N + +  S  E D Y     ADYD  +E   +  + Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 74  LYANGTSVSDSKLEDDLYNSILVADYDNAVEK--SXQIYE-DKKSEVITNVVNKLIRNNK 244
           +YA   S  D  LE DL+N   + +Y++ + K    ++++  KK E   NV+N+ I    
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377

Query: 245 MN 250
           ++
Sbjct: 378 VS 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,735
Number of Sequences: 27780
Number of extensions: 192282
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)