Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0430
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    33   0.23 
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    32   0.31 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    28   6.7  
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    27   8.8  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 20  DAQKMKT-VQVILCLFVASLYANGTSVSDSKLEDDLYNSI--LVADYDNAVEKSXQIYED 190
           D  ++KT VQ I C+      A+ T++  SK  DDL   I  L+ D +  +E   Q+ E+
Sbjct: 711 DQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEE 770

Query: 191 KKSEVITNVVNKLIRNN 241
             S     +      NN
Sbjct: 771 NSSRAWGKIETDSSSNN 787


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +2

Query: 29  KMKTVQVILCLFVASLYANGTSVSDSKL-EDDLYNSILVADYDNAVEKSXQIYEDKKSEV 205
           K KT Q +LC+   +++    S + +++  D++ + I+  DYD  V+ S  I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 206 ITNVVNKLIRNNKMNCRXTPTS 271
           +TN V+  + +  ++   TP+S
Sbjct: 458 LTNGVD--LSDVDLSSTFTPSS 477


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 77  YANGTSVSDSKLEDDLYNSILVADYDNAVEKSXQIYEDKKSEVITNVVNKLIRNNKMNCR 256
           Y     +   KLED L  SIL     N+  K  +++  K+   +T+ VN+L  + ++  +
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 257 XTP 265
             P
Sbjct: 411 SYP 413


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -3

Query: 501 VDLVVXPXRNELPADFXTRLXLAIAVGKSAIVVAVIXQRQSKTXALVHQLNVVFGENKCE 322
           VDLV+       P D+  R+      G+  + V++I +   K   L+H++    G+    
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVK---LIHKIEEEVGKKMEP 427

Query: 321 LNREAXPDDI 292
            N++   D +
Sbjct: 428 YNKKVITDSL 437


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,956
Number of Sequences: 28952
Number of extensions: 177665
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)