Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0428
(546 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 143 6e-35
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 143 8e-35
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 141 2e-34
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 140 4e-34
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 140 4e-34
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 139 1e-33
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 139 1e-33
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 137 4e-33
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 134 3e-32
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 74 7e-14
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 74 7e-14
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 71 7e-13
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 71 7e-13
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 71 7e-13
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 67 8e-12
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 67 8e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 64 4e-11
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 64 4e-11
At4g37190.1 68417.m05265 expressed protein 33 0.16
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 28 3.5
At1g50890.1 68414.m05722 expressed protein 28 3.5
At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containi... 27 6.2
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 143 bits (347), Expect = 6e-35
Identities = 65/88 (73%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGES-DLQLDRINVYYNEASSGKY 184
MREI+HVQ GQCGNQIGSKFWE+I DEHGVD TG Y G+S DLQL+RINVYYNEAS G+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 185 VPRAVLVDLXPGTMXAVTSXPYGSCSGP 268
VPRAVL+DL PGTM ++ S PYG P
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRP 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + + V+R
Sbjct: 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 122
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 138 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 172
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 143 bits (346), Expect = 8e-35
Identities = 60/87 (68%), Positives = 72/87 (82%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIGSKFWE++ DEHG+D TG Y G SDLQL+R+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRA+L+DL PGTM +V + PYG P
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRP 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + + V+R
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 121
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 141 bits (342), Expect = 2e-34
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIG+KFWE++ EHG+D+TG Y+GE+DLQL+R+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM +V S PYG P
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRP 87
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 140 bits (340), Expect = 4e-34
Identities = 60/87 (68%), Positives = 73/87 (83%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIGSKFWE+++ EHG+D TG Y G+S+LQL+R+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM +V S PYG P
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRP 87
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 140 bits (340), Expect = 4e-34
Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGE-SDLQLDRINVYYNEASSGKY 184
MREI+H+Q GQCGNQIGSKFWE+I DEHG+D+TG Y G+ +DLQL+RINVYYNEAS G+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 185 VPRAVLVDLXPGTMXAVTSXPYGSCSGP 268
VPRAVL+DL PGTM ++ S P+G P
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRP 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + + V+R
Sbjct: 84 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 122
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 138 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 172
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 139 bits (336), Expect = 1e-33
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIG+KFWE++ EHG+D TG Y G+SDLQL+RINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM ++ S PYG P
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRP 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1
Query: 259 FRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 139 bits (336), Expect = 1e-33
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIG+KFWE++ EHG+D TG Y G+SDLQL+RINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM ++ S PYG P
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRP 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1
Query: 259 FRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 137 bits (332), Expect = 4e-33
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIG+KFWE+I DEHG+D TG Y G+S LQL+RI+VY+NEAS GKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM ++ S P+G P
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRP 87
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 134 bits (325), Expect = 3e-32
Identities = 58/87 (66%), Positives = 71/87 (81%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 187
MREI+H+Q GQCGNQIG+KFWE+I EHG+D TG G++DLQL+RINVY+NEAS GKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 188 PRAVLVDLXPGTMXAVTSXPYGSCSGP 268
PRAVL+DL PGTM ++ S P+G P
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRP 87
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = +1
Query: 253 KLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
++FRP NFVFG SGAGNNWA HY GA + S V+R
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 417 HSLGGGTGXXXGTLXLSNXXXEYPXXXXNXLAXYP 521
HSLGGGTG GTL +S EYP + +P
Sbjct: 137 HSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 73.7 bits (173), Expect = 7e-14
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +2
Query: 11 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVP 190
REI+ +Q GQCGNQIG +FW+ + EHG+ G+ + + DR +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 191 RAVLVDLXPGTMXAVTSXPY 250
RA+L+DL P + + + Y
Sbjct: 63 RALLIDLEPRVINGIQNGEY 82
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 73.7 bits (173), Expect = 7e-14
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +2
Query: 11 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVP 190
REI+ +Q GQCGNQIG +FW+ + EHG+ G+ + + DR +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 191 RAVLVDLXPGTMXAVTSXPY 250
RA+L+DL P + + + Y
Sbjct: 63 RALLIDLEPRVINGIQNGDY 82
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 7e-13
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MREI+ + GQ G Q+G+ WE+ EHG+ G+ ++ + + D N +++E +GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V +R
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVR 123
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 7e-13
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MREI+ + GQ G Q+G+ WE+ EHG+ G+ ++ + + D N +++E +GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V +R
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVR 123
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 7e-13
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MREI+ + GQ G Q+G+ WE+ EHG+ G +S + D N +++E SSG+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV +DL P + V + Y P L S
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 33.5 bits (73), Expect = 0.094
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V + +R
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLR 123
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 66.9 bits (156), Expect = 8e-12
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MRE + + GQ G Q+G+ WE+ EHG+ G G+ + D N +++E +GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V IR
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 66.9 bits (156), Expect = 8e-12
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MRE + + GQ G Q+G+ WE+ EHG+ G G+ + D N +++E +GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V IR
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 64.5 bits (150), Expect = 4e-11
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MRE + + GQ G Q+G+ WE+ EHG+ G + + D N +++E +GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V IR
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 64.5 bits (150), Expect = 4e-11
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQL--DRINVYYNEASSGK 181
MRE + + GQ G Q+G+ WE+ EHG+ G + + D N +++E +GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 182 YVPRAVLVDLXPGTMXAVTSXPYGSCSGPITLSS 283
+VPRAV VDL P + V + Y P L S
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLIS 94
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 244 TLRKLFRPXNFVFGXSGAGNNWAXXHYXXGAXXVSSXTSVIR 369
T R+LF P + G A NN+A HY G V IR
Sbjct: 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 32.7 bits (71), Expect = 0.16
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +2
Query: 8 MREIVHVQAGQCGNQIGSKFW----EIISDEHGVDTTGVYKGESDLQLDRINVYYNEASS 175
MREIV +Q G+ N +GS FW E++ ++ +++ +L +D + E
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNH-NLDMD-VLYRSGETQQ 58
Query: 176 G--KYVPRAVLVDLXPGTMXAVTS 241
G Y PR V V+L G + ++S
Sbjct: 59 GVATYTPRLVSVNL-KGALGTMSS 81
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 29 QAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKY-VPRAVL 202
QA G IG ++W IIS + G D T Y+G D+ + + +Y VPR+ L
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRGA--YNSDKCTTNCGKPTQTRYHVPRSWL 733
>At1g50890.1 68414.m05722 expressed protein
Length = 821
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 16 NSPRASRPMRESDRIEVLGDNLRRAWRRHDRSLQRGERPAAR 141
N+ ++R +R + E G N RRAW + +++ GE P+AR
Sbjct: 585 NTQTSTRKIRGTGPSEQSG-NSRRAWDKSSVAIRLGEGPSAR 625
>At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 729
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 73 DNLRRAWRRHDRSLQRGERP 132
DNL A+R HD LQRG P
Sbjct: 706 DNLTEAFRIHDEMLQRGFSP 725
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,644
Number of Sequences: 28952
Number of extensions: 134225
Number of successful extensions: 352
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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