Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0427
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 7e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 82 9e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 3e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 63 6e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 46 5e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 3e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 44 3e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.003
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.0
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 7.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (426), Expect = 7e-45
Identities = 93/143 (65%), Positives = 107/143 (74%), Gaps = 4/143 (2%)
Frame = -1
Query: 691 KSYELPDGQVITIGKRKDSVAQRLSSNPRFLGMESLR-HPRDHI*LHH---EVRRGHP*G 524
KSYELPDGQVITIG + + L P LG+E+ H + + ++R+
Sbjct: 238 KSYELPDGQVITIGNERFRAPEALFQ-PSALGLENAGIHEATYNSIMKCDVDIRKD---- 292
Query: 523 LVRQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 344
L V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 343 QQMWISKQEYDESGPSIVHRKCF 275
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 82.2 bits (194), Expect = 9e-17
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Frame = -1
Query: 688 SYELPDGQVITIGKRKDSVAQRLSSNPRFLGMESLRHPRDHI*LHHEVRRGH---P*GLV 518
+Y+LPD Q IT+G S + L NP +G E+ HI L + L
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLF-NPEMMGSEASGL---HIQLFKSILLSDIDLRSTLY 299
Query: 517 RQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 338
VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF++
Sbjct: 300 SNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRR 359
Query: 337 MWISKQEYDESGPSIVHRKCF 275
+ I+ +EY ++ +++ R+ F
Sbjct: 360 LLITSEEY-KNDQNVIFRRRF 379
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 591 KACGIHETTYNSIMKCDVDIRKDLYAN 511
+A G+H + SI+ D+D+R LY+N
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSN 301
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 74.5 bits (175), Expect = 2e-14
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Frame = -1
Query: 691 KSYELPDGQVITIGKRKDSVAQRLSSNPRFLGMESLRH--PRDHI*LHHEVRRGH----- 533
K +E PDG G+ + +++ L NP F S P+ + LH V +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILF-NPSFSASRSAETTPPQGSVGLHELVYQSILACDS 337
Query: 532 --P*GLVRQHVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSI 365
L+ V++GGT++ PG+++R+Q E+ LA S + + +VW GGSI
Sbjct: 338 ELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSI 397
Query: 364 LASLSTFQQMWISKQEYDESG 302
LASL FQ +W+SKQEYDE G
Sbjct: 398 LASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 73.7 bits (173), Expect = 3e-14
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = -1
Query: 523 LVRQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 353
L+ ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 352 STFQQMWISKQEYDESGP---SIVHRKC 278
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 693 ESLTNFPTVRSSLSENEKIPLPRGSLPTLVSWVWKACGIHETTYNSIMKCDVDIRKDLYA 514
E + P+ +EN ++ S+ S + GI + N I +CDVDIR L
Sbjct: 292 EEMNEEPSKPIEQTENNEVSQQDSSVTNTSS---RILGIPQLFQNCISECDVDIRASLLN 348
Query: 513 N 511
N
Sbjct: 349 N 349
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 62.9 bits (146), Expect = 6e-11
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Frame = -1
Query: 691 KSYELPDGQVITIGKRKDSVAQRLSSNPRFLGMESLRHPRDHI*LHHEVRRGHP*GLVRQ 512
++Y LPDG+VI +G + + L P +G E L R
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQ-PHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRA 296
Query: 511 HVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSI 365
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++
Sbjct: 297 IVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAV 356
Query: 364 LAS-LSTFQQMWISKQEYDESG 302
LA ++ MW+SK E++E G
Sbjct: 357 LADIMAQNDHMWVSKAEWEEYG 378
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 647 TKRFRCPEALFQPSFLG 597
++R+ CPE LFQP +G
Sbjct: 252 SERYECPECLFQPHLVG 268
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 582 GIHETTYNSIMKCDVDIRKDLY 517
G+ E +++I DVDIRK LY
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLY 294
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.4 bits (105), Expect = 5e-06
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = -1
Query: 526 GLVRQHVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 389
GL + VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 388 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 284
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.0 bits (99), Expect = 3e-05
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = -1
Query: 523 LVRQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 344
L+ V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 343 QQMWISKQEYDESGPSIVHRK 281
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = -1
Query: 523 LVRQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 344
LV +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 343 QQMWISKQEYDESGPSIV 290
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -1
Query: 508 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 338
++ GG +PG A +++ I + + I +I PP + ++ W G I + +
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSE 593
Query: 337 MWISKQEYDESGPSIVHRK 281
+WI ++ G ++ K
Sbjct: 594 LWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 382 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 281
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 690 SLTNFPTVRSSLSENEKIPLPRGSLPTLVSWVWK 589
S T+F + +++ ++EKI P G + +WK
Sbjct: 266 SKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWK 299
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 390 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 295
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 457 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 347
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 555 IMKCDVDIRKDLYANTYCPVV 493
+ C V++R ++YA CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,420
Number of Sequences: 5004
Number of extensions: 73532
Number of successful extensions: 238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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