Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0427
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             150   1e-38
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  150 bits (364), Expect = 1e-38
 Identities = 84/126 (66%), Positives = 93/126 (73%), Gaps = 4/126 (3%)
 Frame = -1

Query: 691 KSYELPDGQVITIGKRKDSVAQRLSSNPRFLGMESLR-HPRDHI*LHH---EVRRGHP*G 524
           KSYELPDGQVITIG  +    + L   P FLGME+   H   +  +     ++R+     
Sbjct: 13  KSYELPDGQVITIGNERFRCPEALFQ-PSFLGMEACGIHETTYNSIMKCDVDIRKD---- 67

Query: 523 LVRQHVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 344
           L    VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTF
Sbjct: 68  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTF 127

Query: 343 QQMWIS 326
           QQMWIS
Sbjct: 128 QQMWIS 133


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 730 KWXTGC-IQQFLRRKSYELPDGQVITIGKRKDSV 632
           K+   C I  ++RRK  E    + +T+G R + V
Sbjct: 224 KYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECV 257


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 509 RIVRWYHHVPWNRRPYAK 456
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 509 RIVRWYHHVPWNRRPYAK 456
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,113
Number of Sequences: 438
Number of extensions: 5789
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)