Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.71 
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   6.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   6.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   6.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 394 YSGARKWTVGGHSGYYALEAALDRAIKEGYDITNPEYY*R 513
           YSG  K     H   Y +   +   IK  Y++TN ++Y R
Sbjct: 428 YSGPYKIIAKPHPNTYQIADPVTNEIKGVYNMTNLKFYHR 467


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 400 GARKWTVGGHSGYYALEAALDRAIKEGYDITN 495
           G+ +   GG SGY  L + L    K   D+ N
Sbjct: 158 GSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFN 189


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 400 GARKWTVGGHSGYYALEAALDRAIKEGYDITN 495
           G+ +   GG SGY  L + L    K   D+ N
Sbjct: 318 GSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFN 349


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 400 GARKWTVGGHSGYYALEAALDRAIKEGYDITN 495
           G+ +   GG SGY  L + L    K   D+ N
Sbjct: 318 GSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFN 349


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 219 CLAYLAIYSPDFAGSKTTSSSMVIK 145
           CL  + +Y+PD  G K+     +++
Sbjct: 315 CLRAIILYNPDVRGIKSVQEVEMLR 339


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,985
Number of Sequences: 336
Number of extensions: 4286
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)