Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    60   4e-10
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.4  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   4.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   7.2  

>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 23/61 (37%), Positives = 44/61 (72%)
 Frame = +3

Query: 561 KIPLFKERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVNNFPSXRDEAVYKG 740
           KIPL +ERI ++  +G +L++ Y+G++   LK+ +  A +L+++++ +FP  RD +VYKG
Sbjct: 147 KIPLLEERIRIMRASGRVLVDSYHGSYCGLLKKCHNQAQRLIKLLLADFPDFRDVSVYKG 206

Query: 741 Q 743
           +
Sbjct: 207 R 207



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 11/75 (14%)
 Frame = +1

Query: 316 IHPNVEHPRAVDWVFVADTLNFCFWS-----YSG--ARKWTVGG----HSGYYALEAALD 462
           +HP       +DW+F+ D LNF FWS      SG  ++++++      ++GY++L AA++
Sbjct: 51  LHPKTRDVSTLDWIFLVDILNFSFWSDVDVEDSGKHSKRFSIEYKGKLYTGYWSLCAAIN 110

Query: 463 RAIKEGYDITNPEYY 507
           +A+  G  IT+P +Y
Sbjct: 111 KALDAGIPITSPAFY 125


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 522 EQLEMIMRGDNEAKIPLFKERISVLHETGAILLEKYN 632
           E+ E  +R +NE  I LFKE +  L +    L E+YN
Sbjct: 581 EKFEKTIR-ENEESISLFKEEVEKLTDEITQLSERYN 616


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 233 EEGLDKALKRYSRQCLQVNWK 295
           +EGL+K + +Y+ Q + ++WK
Sbjct: 125 DEGLEKKITKYTSQPVDIHWK 145


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 335 CSTLGCIPVPASGISSLLVDID 270
           C T G +PVP S +   L D+D
Sbjct: 447 CETCGAVPVPESELPVKLPDLD 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,011
Number of Sequences: 5004
Number of extensions: 69020
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)