Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329...    54   1e-07
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965...    30   2.5  
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579     29   3.3  
03_05_0518 + 25120610-25120733,25121434-25121978                       29   5.7  
01_07_0195 + 41907183-41907306,41907427-41907974                       28   7.6  
03_01_0477 + 3662999-3663356,3664012-3664111,3664204-3664324,366...    28   10.0 

>07_03_1096 +
           23931862-23931931,23932406-23932549,23932888-23932986,
           23933422-23933498,23933813-23933921,23934973-23935301,
           23935838-23935930
          Length = 306

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 35/59 (59%)
 Frame = +3

Query: 564 IPLFKERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVNNFPSXRDEAVYKG 740
           +P+ +ER+ +LHE G  L   + G     +K A  SA  L+E+I  +FP  RD ++YKG
Sbjct: 118 LPIEEERVRLLHEVGMELERSFGGEAANLVKSAGNSAATLIELITRHFPGFRDHSLYKG 176



 Score = 35.5 bits (78), Expect = 0.050
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 313 GIHPNVEHPRAVDWVFVADTLNFCFW 390
           GIH   + P  V ++FV D LNFCFW
Sbjct: 45  GIHYFDDGPLTVQYLFVLDALNFCFW 70


>02_02_0392 -
           9649858-9650405,9650499-9650670,9650788-9650926,
           9651113-9651334,9651422-9651495,9653042-9653661,
           9653810-9653965,9655250-9655347,9655443-9655534,
           9655891-9655977
          Length = 735

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 412 WTVGGHSGYYALEAALDRAIKEGYDI 489
           W VGG+ G  A+ AA+D AI +G D+
Sbjct: 256 WGVGGNFGDAAVLAAVDDAINDGVDV 281


>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
          Length = 339

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +1

Query: 307 GTGIHPNVEHPRAVDWVFVADTLNFCFWSYSGARKWTVGGHSGYYALEAALDRAIKEGYD 486
           G G+HP   H  +  +VF  D   + ++       W VG H+ ++         + +  +
Sbjct: 237 GGGMHPMAGHFISEHYVFNPDQETYSYYGPLNLMTWHVGYHNEHHDFPRIPGTRLYKVRE 296

Query: 487 ITNPEYY 507
           I  PEYY
Sbjct: 297 IA-PEYY 302


>03_05_0518 + 25120610-25120733,25121434-25121978
          Length = 222

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 265 LTSMSTSKLEIPDAGTGIHPNVEHPRAVDWVFVAD-TLNFCF 387
           L +M  S   I  A  G+ P   HPRA + +FVA+ TL+  F
Sbjct: 91  LNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGF 132


>01_07_0195 + 41907183-41907306,41907427-41907974
          Length = 223

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 265 LTSMSTSKLEIPDAGTGIHPNVEHPRAVDWVFVAD 369
           L +M  S   I  A  G++P   HPRA + +FV +
Sbjct: 91  LNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVE 125


>03_01_0477 +
           3662999-3663356,3664012-3664111,3664204-3664324,
           3664468-3664563,3664669-3664791
          Length = 265

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 176 LPAKSGEYIARYAKHVQIHEEGLDKALKRYSRQCLQVN-WKSLMQEQVYILMLNTQGLWT 352
           +P  SGE++ R +         L ++L   +   L+ N W+    + VY+L      LWT
Sbjct: 87  IPGTSGEFLRRVSSRAYGMRRHLMESLDSLAYDVLETNPWRE-DSKPVYVLARRDNHLWT 145

Query: 353 GCLLRTR 373
               R+R
Sbjct: 146 MKTRRSR 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,575
Number of Sequences: 37544
Number of extensions: 414792
Number of successful extensions: 1089
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)