Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26771| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.6)                54   2e-07
SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   5.8  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             29   5.8  

>SB_26771| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.6)
          Length = 145

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 316 IHPNVEHPRAVDWVFVADTLNFCFWSYSGARKWTV----GGHSGYYALEAALDRAIK 474
           +HP       VDW+FV DTLNF FW   G   WT+        GY+AL A ++RAI+
Sbjct: 89  LHPKEMSKATVDWIFVLDTLNFSFWVDDGLEPWTIRHKGKDFQGYWALCAGINRAIE 145



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 170 VLLPAKSGEYIARYAKHVQIHEEGLDKA 253
           V+LP +SG +IA ++K V + EEG+ +A
Sbjct: 39  VMLPRESGSFIASHSKDVSLCEEGISRA 66


>SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 347 TALGCSTLGCIPVPASGISSLLVDIDVSISLMLYLILL 234
           T++  S + C+P P +    LLV +D  IS   +L++L
Sbjct: 344 TSINLSGMQCVPTPGNKKHQLLVKLDTFISHSAFLLVL 381


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 197 YIARYAKHVQIHEEGLD-KALKRYSRQCLQVNWKSLMQEQ 313
           Y    ++HV  ++     K +KR  RQ  +VNW+S+ + Q
Sbjct: 448 YFYTCSEHVSSNDSNAQWKRVKRIPRQATEVNWESVKRNQ 487


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 264 YLFNALSNPSSCICTCLAYLAIY 196
           +LF A+  PS  +  C AYLAIY
Sbjct: 251 FLFAAIVAPSGLLIMCAAYLAIY 273


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 425  PPTVHFRAPLYDQKQKFNVSATNTQSTALGCSTLGCI 315
            PPTVH  + + D++ +  ++AT   ST L     GC+
Sbjct: 1097 PPTVH-ESGVTDKQNRLKLAATMPSSTGLASKPEGCL 1132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,266,288
Number of Sequences: 59808
Number of extensions: 491334
Number of successful extensions: 1186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)