Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical ...    70   2e-12
AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    29   5.1  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    29   5.1  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    28   9.0  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    28   9.0  

>AF045640-3|AAM81120.1|  344|Caenorhabditis elegans Hypothetical
           protein C11D2.4 protein.
          Length = 344

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/74 (40%), Positives = 50/74 (67%)
 Frame = +3

Query: 522 EQLEMIMRGDNEAKIPLFKERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVN 701
           E+++ I + D+   IPL  +R+  ++++G +LLEK++G F  C+ ++ KSA  LL++IV 
Sbjct: 128 EEIDRIFKSDSGHSIPLLDDRVKAINDSGKVLLEKFDGQFYNCVIKSEKSAQTLLKLIVE 187

Query: 702 NFPSXRDEAVYKGQ 743
           NF S RD A + GQ
Sbjct: 188 NFVSFRDFAEFNGQ 201



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 316 IHPNVEHPRAVDWVFVADTLNFCFWSYSGAR---KWTVGGHSGYYALEAALDRAIKEGYD 486
           +HP      AV WV + DT+NF FW   G      W    ++GY+A  AA+++AI  G  
Sbjct: 56  LHPKSGDKDAVQWVLLVDTINFSFWPDEGDHYDVSWGGKAYTGYFAACAAVNKAIAAGIP 115

Query: 487 ITNPEY 504
           + + E+
Sbjct: 116 VLSAEW 121


>AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical
           protein Y75B8A.3 protein.
          Length = 827

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/87 (20%), Positives = 37/87 (42%)
 Frame = +2

Query: 92  LNSN*NFLSTFTFYSDYHFITMDDEVVLLPAKSGEYIARYAKHVQIHEEGLDKALKRYSR 271
           +N N N ++ F+       I  D    L   +   Y+   A+HV++++      + R + 
Sbjct: 612 VNGNGNGVTDFSQLRTISSIASDQSTSLTTTQIQSYMQNGARHVRVYQFTHVSEVGRNTV 671

Query: 272 QCLQVNWKSLMQEQVYILMLNTQGLWT 352
                NWK + + Q    +  ++ +WT
Sbjct: 672 PDTGANWKPVFKGQDMYFITMSETIWT 698


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 460 QGQPPKHNTQNVHQQSISELHCMTRNRNLTCPQQTPSPQPLGVQ 329
           Q Q  +H     H Q       + R+ NL  P + PSP+P+ V+
Sbjct: 195 QPQMTRHQMAQHHAQQPHPQIYVPRDMNLAVPLREPSPEPIPVK 238


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 460 QGQPPKHNTQNVHQQSISELHCMTRNRNLTCPQQTPSPQPLGVQ 329
           Q Q  +H     H Q       + R+ NL  P + PSP+P+ V+
Sbjct: 195 QPQMTRHQMAQHHAQQPHPQIYVPRDMNLAVPLREPSPEPIPVK 238


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 460 QGQPPKHNTQNVHQQSISELHCMTRNRNLTCPQQTPSPQPLGVQ 329
           Q Q  +H     H Q       + R+ NL  P + PSP+P+ V+
Sbjct: 195 QPQMTRHQMAQHHAQQPHPQIYVPRDMNLAVPLREPSPEPIPVK 238


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 313 GIHPNVEHPRAVDWVFVADTLNFCFWSYSGARKWTVGGHSGYYALEAA 456
           G+  N  H   VDW +        FW  SG+ + +  G S     EAA
Sbjct: 698 GVTENDRHMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAA 745


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 313 GIHPNVEHPRAVDWVFVADTLNFCFWSYSGARKWTVGGHSGYYALEAA 456
           G+  N  H   VDW +        FW  SG+ + +  G S     EAA
Sbjct: 698 GVTENDRHMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAA 745


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,549
Number of Sequences: 27780
Number of extensions: 391235
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)