Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0425
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    25   1.1  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    25   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 576 KERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVN 701
           K  ISV  E+   ++ + N   ++ +  AN SA+ L + +VN
Sbjct: 25  KTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVN 66


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 576 KERISVLHETGAILLEKYNGTFTTCLKEANKSALKLLEIIVN 701
           K  ISV  E+   ++ + N   ++ +  AN SA+ L + +VN
Sbjct: 25  KTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVN 66


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 374 NVSATNTQSTALGCSTLGCIPVPASGISSLLVDIDVSISLMLYLILLHVSVHA 216
           N  AT+ +  ALG +T+  +   ++G+ S L  I    ++ +YL++  V V A
Sbjct: 266 NHEATSAR-VALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFA 317


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 KEILTSMSTSKLEIPDAGTGIHPNVEHPRAV 348
           K + TS++ SK+E+ +     HPN +  R V
Sbjct: 381 KHLPTSLTKSKMEVMELSDLHHPNCKINRKV 411


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 438 IPRMSTNSPFPSSTV*P 388
           I R S+ SPF +ST+ P
Sbjct: 559 IERQSSESPFTTSTIMP 575


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 438 IPRMSTNSPFPSSTV*P 388
           I R S+ SPF +ST+ P
Sbjct: 559 IERQSSESPFTTSTIMP 575


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 413 HFRAPLYDQKQKFNVSATNTQSTALGCSTLGCIPV 309
           H R P +  +    V  +N+    L C+  G  P+
Sbjct: 26  HLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPPL 60


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 413 HFRAPLYDQKQKFNVSATNTQSTALGCSTLGCIPV 309
           H R P +  +    V  +N+    L C+  G  P+
Sbjct: 26  HLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPPL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,540
Number of Sequences: 438
Number of extensions: 4836
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)