Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0423
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   4e-06
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   4e-06
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.001
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.017
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   35   0.017
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     32   0.16 
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         27   4.6  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        27   6.1  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 27   6.1  
SB_11485| Best HMM Match : Cytochrom_B561 (HMM E-Value=2.1)            27   6.1  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       26   8.0  
SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +2

Query: 23  IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
           + AN F   +LRGL GD N E YD+F+ P G+   +  +F  A+RL
Sbjct: 15  VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +2

Query: 23   IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
            + AN F   +LRGL GD N E YD+F+ P G+   +  +F  A+RL
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 41  YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
           Y G   GL G+ N  P DDF + NG+   S+ EFG ++ L
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 59  GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
           GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 59   GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
            GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 1844


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 8   LEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 151
           L V +     FY G   GL GD +N P +DF  P G+  T   +F  +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 36  ASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWXAAVH 176
           A +W +  + + T +  L+ T  Y+M  SA   AS  +RT +   +H
Sbjct: 386 APSWTSTTLLNLTHSRVLSRTVEYVMHSSACHAASCTSRTTYVNVMH 432


>SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 72  TVTTSLTMTSGYLMERSALRKASSVTRTVWXAAVHKCKXPNTPTTSCTMHRSPPPA 239
           TV TS    SG + +R  LR ++  T  V    +  C     P  SCT   SPP A
Sbjct: 8   TVVTSSFQESGGIAQRYGLRFSNKRTG-VRIQRLPTCTPVTLPFISCTAVHSPPNA 62


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 SLPPACEQVFGEYRRSGPC 277
           S+ P+C+ +F E+ R GPC
Sbjct: 28  SVTPSCKGIFSEWSRWGPC 46


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 209 LHDASLPPACEQVFGEYRRSGPCLCSWTCRLLDRRVFTPSPA 334
           L D + P     VFGE +++  CLC+ T   L   V+T   A
Sbjct: 179 LIDVNSPRLLMPVFGEAQKALNCLCNGTAAPLHALVYTDRSA 220


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 297 RHVHEQRQGPERRYSPKTCSQAGGSDAS 214
           +H    R+GP RR+ P   S A G+  S
Sbjct: 789 QHGSTMREGPSRRHEPLNTSDADGTGVS 816


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 237  QAGGSDASCSWWWECSGACTCGQLRXRRY 151
            Q  G       W ECS +C  G+ + RRY
Sbjct: 955  QVNGGYTDWDDWSECSKSCGVGKKKRRRY 983


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 168 AVHKCKXPNTPTTSCTMHRSPPPANRSSGNIAAQDPVF 281
           A HK +  NTPT S    R+    +  SG + +  P +
Sbjct: 457 ATHKFETRNTPTLSIATERARKGPDEESGLVTSTRPTY 494


>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 176 QVQAPEHSHHQLHDASLPPACEQVFGEYRRSGP 274
           Q+QAP+   HQL     P   ++  G+Y    P
Sbjct: 323 QLQAPQQQQHQLQQQQKPEENKKAKGKYEPKQP 355


>SB_11485| Best HMM Match : Cytochrom_B561 (HMM E-Value=2.1)
          Length = 590

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 119 ICTSESEFGNAYRLXRSCPQVQAPEHSHHQLHDASLPPACEQVFGEYRRSGPCLCSW 289
           + T+    G    L  +CPQ     +  H     SL  A   +F    RS PC CSW
Sbjct: 372 LTTAHMFLGVTRSLPCTCPQALLAHYRAHVPRRYSLTFA--HMFLGVTRSLPCTCSW 426


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 33  TASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVW 161
           T  T    AVF  T+T S  +TS  L+  SA+   +S T  V+
Sbjct: 626 TLRTTSTSAVFPTTITPSPNITSYILLMTSAVGNFTSATSVVF 668


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 23  IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKI 121
           ++ + ++   LRG++ D +NEP  DF  P  K+
Sbjct: 193 LDGDKYFATWLRGIIPDRDNEPPMDFYPPKKKM 225


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +2

Query: 56  RGLLGDGNNEPYDDFRLPNGKICTSES------EFGNAYRLXRS 169
           +GL+G  N    DD   PNG +    S      EFG  +R+  S
Sbjct: 126 QGLMGKMNENKEDDLAFPNGTMIPVNSDEKKIFEFGQTWRVPNS 169


>SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 23  IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEF 142
           +E  G++L K  G   D  +E  +D +L NGK    ES+F
Sbjct: 291 LEEIGYHLTKTSGSSKD-KSESLEDTQLWNGKTLAIESQF 329


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = +3

Query: 69  ETVTTSLTMTSGYLMERSALRKASSVTRTVWXAAVHKCKXPNTPTTSCTMHRSPPPANRS 248
           ET T+S   TS      S     S    T   +       P T T+      SPPP++ S
Sbjct: 674 ETSTSSSKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSPSQQTTSPPPSSPS 733

Query: 249 SG 254
            G
Sbjct: 734 IG 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,538
Number of Sequences: 59808
Number of extensions: 221349
Number of successful extensions: 794
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)