Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0423
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   3.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 23   IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 160
            ++A+  Y   +RGL G+ +++  +DF  P   +      F  +Y L
Sbjct: 1584 LKASEDYRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
 Frame = +1

Query: 112  WKDLHFGKRVR*RVPSGPQLSTSASXRTLXXXXXXXXXXXXXXTGLR--GISPL----RT 273
            W +  F +R+R  +PS   +S  +    L                +   G+S L    R 
Sbjct: 1191 WNEKRFWERLRYAIPSAGDISIESKSSPLVYKRNINTYTLDGVGSVEKTGVSTLRGQERQ 1250

Query: 274  LSLFMDMSP 300
             SLF D SP
Sbjct: 1251 RSLFKDSSP 1259


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 SSGNIAAQDPVFVHGHVA 299
           ++G IA  DP F  GH A
Sbjct: 15  AAGEIAHNDPHFAPGHDA 32


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 75  VTTSLTMTSGYLMERSALRKASSV 146
           VTT LTMT+      +AL K S V
Sbjct: 257 VTTVLTMTTLMSSTNAALPKISYV 280


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 75  VTTSLTMTSGYLMERSALRKASSV 146
           VTT LTMT+      +AL K S V
Sbjct: 257 VTTVLTMTTLMSSTNAALPKISYV 280


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 75  VTTSLTMTSGYLMERSALRKASSV 146
           VTT LTMT+      +AL K S V
Sbjct: 196 VTTVLTMTTLMSSTNAALPKISYV 219


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 228 PPPANRSSGNIAAQDP 275
           P P N +S NI+  DP
Sbjct: 654 PLPPNLASANISQLDP 669


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,319
Number of Sequences: 438
Number of extensions: 1981
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)