Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0421
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     89   4e-18
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   4.7  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +3

Query: 252 QEQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKE 431
           +E LL  +  +    +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    +KE
Sbjct: 59  KESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKE 118

Query: 432 AGIRMFTSVPGVFGNRQTENLDVIKGC*YLLCN-QTNQ 542
           + + +F S PGVFGN+Q   L+VIK   +   N QT+Q
Sbjct: 119 SALNIFCSFPGVFGNQQDHYLNVIKQMLWQCINDQTSQ 156



 Score = 27.5 bits (58), Expect(2) = 0.10
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 154 DVRQTAAVLLRRLFSA 201
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42



 Score = 25.8 bits (54), Expect(2) = 0.10
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 16 FYQLLNTLLSTDNDIRSQAE 75
          F  L+  L+S DND R+QAE
Sbjct: 8  FEALIGQLMSPDNDTRNQAE 27


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 306 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 422
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,648,685
Number of Sequences: 59808
Number of extensions: 477419
Number of successful extensions: 1093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)