Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0421
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    50   3e-06
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/70 (31%), Positives = 37/70 (52%)
 Frame = +3

Query: 297 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 476
           +++K+ D++SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 477 RQTENLDVIK 506
           R    L  +K
Sbjct: 160 RLAHFLPTLK 169



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 26/65 (40%), Positives = 33/65 (50%)
 Frame = +1

Query: 4   DXVXFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 183
           D   F +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 184 RRLFS 198
           RR+ +
Sbjct: 62  RRVLA 66


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -3

Query: 548 KPLIRLVAKQILTSFYHIQVFSLTISKYTWYRRKHS 441
           +P++ L+  +++T FY  Q+FS+T+    WY  +++
Sbjct: 177 RPILYLLVMEVITPFYVFQIFSVTV----WYNDEYA 208


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 264  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 443
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 444  MFTSV 458
               S+
Sbjct: 1183 AADSI 1187


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 542 LIRLVAKQILTSFYHIQ-VFSLTI--SKYTWYRRKHSNTSFFDVWILRTGTGKHEL 384
           +I L++  I T FY +  + +L I  S Y+ +RRK    +FF  +    G G+  L
Sbjct: 5   VISLISHSITTVFYLVPLIIALIIPFSLYSGFRRKSKTVAFFHPYCNAGGGGERVL 60


>AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical
           protein F54D10.8 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 560 PEFAKPLIRLVAKQILTSFYHIQVFSLTISKYTWYRRKHSN 438
           PEF + L   +  ++   +  + V   TI++Y W  R++ N
Sbjct: 408 PEFVESLSNAIVAKVQHVYCKVPVNCTTIARYLWESRQYPN 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,335
Number of Sequences: 27780
Number of extensions: 376619
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)