Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0421
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.87 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.87 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 611 MIGSLSCSSIKXLRL*LPEFAKPLIRLVAKQILTSFY 501
           +IG  S      LR  +P F K L+R+V+     SFY
Sbjct: 138 VIGGASRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFY 174


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 611 MIGSLSCSSIKXLRL*LPEFAKPLIRLVAKQILTSFY 501
           +IG  S      LR  +P F K L+R+V+     SFY
Sbjct: 138 VIGGASRGCTAVLRCVVPSFVKDLVRVVSWLQEPSFY 174


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 508 PFITSKFSV*RFPNTP-GTDVNILIPA--SLMFGSCALAQVNMNCRNSGHWLLPS 353
           P I+  F+   FP TP G +V ++     + +  +  + Q    C+  G W LPS
Sbjct: 192 PEISVNFA--HFPATPTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPS 244


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 701 LSNAESSISCXIDRTXPCIKGRRTSLKCFXMIGSLSCSSI 582
           LSN + S+    DR+ P +K   ++   F +IG  S SS+
Sbjct: 43  LSNLDMSVLECADRSAPRVKKTASAGPIFGVIGG-SYSSV 81


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 701 LSNAESSISCXIDRTXPCIKGRRTSLKCFXMIGSLSCSSI 582
           LSN + S+    DR+ P +K   ++   F +IG  S SS+
Sbjct: 133 LSNLDMSVLECADRSAPRVKKTASAGPIFGVIGG-SYSSV 171


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 75  GRIQQHSNRNKSSAPSEFNSKCRHCRR 155
           G I+  + + K+  P EF  +C+  R+
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWSRK 160


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 541 NGFANSGS*SRRXFILLHDKEPIIXKHFSDVLLPLMQGIVLSMXQLMD 684
           +G  N GS  +R    L D   ++ +   +   PL+    L++ Q++D
Sbjct: 15  SGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIID 62


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 718 QNXHPKISPXPAGRPFSQVCKKGGW 792
           +N    I   PA   F+++C K GW
Sbjct: 197 KNPDGTIIGDPANIEFTELCMKLGW 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,916
Number of Sequences: 438
Number of extensions: 4930
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)