Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0418
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.38 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.87 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    28   1.5  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    27   2.7  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   2.7  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    27   3.5  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.5  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.6  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.6  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    27   4.6  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   8.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   8.1  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 149 EVSWVATALPLAAICGIPFFSYASDRFGRKLCVIADPYC 265
           +VSW ATA  ++     P F    D +GRK  ++A  YC
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLA-AYC 162



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 292 TSINTPSLIAARVIAGIASGGCFVAVPVYVKEISEDAWRG 411
           TS +   L+AAR IAGI  GG    V + + +I     RG
Sbjct: 173 TSRSLWQLVAARAIAGIGGGGMNSTVSILMSDIVPLKQRG 212


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 115 TVSSGHAPKR*RGLLGGHSSTTRSYMWDTLLQLRIRSLRQEAVRHRR 255
           T++SGH       +L    S+  +++WD  +  RIR    +++ H+R
Sbjct: 279 TLTSGHGYLFWLWILSALLSSAYTFLWDVFIDWRIRFPFHKSINHKR 325


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 283 IKLTSINT-PSLIAARVIAGIASGGCFVAVPVYVKEISEDAWRGALGSLTITVSKLGVIF 459
           I++T++ +   ++ A++  G++ G   V  P Y  E++    RGA+ +       LG+  
Sbjct: 70  IQVTTVPSWVQILVAKIWTGLSIGALSVITPGYQSEVAPAIMRGAIVTTYQLFITLGIFI 129

Query: 460 VYAVGM 477
              + M
Sbjct: 130 AACINM 135


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 525 IHVIMFSFMPESPNYLLKIRRRKXSSQ 605
           I  I  SF+PESP YL+ + R + + Q
Sbjct: 191 ITFIGISFLPESPRYLISVGRDEEALQ 217


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 283 IKLTSINT-PSLIAARVIAGIASGGCFVAVPVYVKEISEDAWRGALGSLTITVSKLGVIF 459
           ++LT+I +   ++ A++  G+  G   V  P Y  E S    RGA+ +       LG+  
Sbjct: 102 VQLTTIPSWVQMMVAKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLGIFI 161

Query: 460 VYAVGMSC-SYATN 498
              + M    Y T+
Sbjct: 162 AACINMGTHKYTTH 175


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 155 SWVATALPLAAICGIPFFSYASDRFGRKL 241
           SW+ TA  LA    +PF    S+  GRK+
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKI 156


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 154 LLGGHSSTTRSYMWDTLLQLRIRSLRQEAV 243
           +L GHS+T R Y+ D + Q    S  +E V
Sbjct: 232 ILCGHSNTERGYLKDVMCQKLASSFHKEGV 261


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 155 SWVATALPLAAICGIPFFSYASDRFGRKL 241
           SW+ TA  LA    +PF    S+  GRK+
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRKI 156


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 8   IFYPLRHQKYIATIPTFTYGIQIGWLSPLGPVLKSK 115
           +F P R+   I+T+P+  + I  G+LSP   +  SK
Sbjct: 164 LFLPRRNIYSISTLPSQRFEIVTGFLSPFNKLYFSK 199


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 157 LGGHSSTTRSYMWDTLLQLRIRSLRQEAVRHRRSLLSCVS 276
           LG   + TR Y+   +L+L + S      RHR ++L+C++
Sbjct: 345 LGNRDNNTR-YVALNMLKLVVNSEENAVQRHRSTILACLN 383


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 258 LIVMCVLDDQADFDQHPVSDSSQGHSRYSIRRLLRC 365
           +++  +L+ +  FD +P  D      +  ++RL+RC
Sbjct: 310 IVLFALLEGRLPFDSYPTLDPENVRIKRYVQRLVRC 345


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 313 LIAARVIAGIASGGCFVAVPVYVKEISEDAWRGALGSLTITVSKLGVIFVYA 468
           ++  +++AG+  G   V  P Y  E++    RGA+ + T  +   G   V A
Sbjct: 113 VLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVA-TYQIFSTGAALVAA 163


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +3

Query: 531 VIMF---SFMPESPNYLLKI 581
           +IMF   SF+PESP YL+ I
Sbjct: 190 IIMFIGISFLPESPRYLIAI 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,276
Number of Sequences: 5004
Number of extensions: 77291
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)