Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0418
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         27   0.30 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.9  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 241 VRHRRSLLSCVSWTIKLTSINTPSLIAARVIAGIASGG 354
           +RHRR     +SW  K  SIN  S  A R +A    GG
Sbjct: 57  LRHRRVTCDVLSWQSKWLSIN-HSACAIRCLAQRRKGG 93


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 529 WIPLMLRTLFDWWHRNSSFRRRKRI 455
           W P  + +L+ W  RNS+++  +RI
Sbjct: 273 WTPYYVMSLWYWIDRNSAYKIDQRI 297


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 411 PSPGIFRYFFDVHRHRNEAAA*CYTGYDPGCYQ 313
           P+P + RYF  +  +  E A       DP  Y+
Sbjct: 828 PTPNLLRYFASIATNPKEQAQLNLLASDPAVYE 860


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 451 LPVSTRLWSGSQVPLARHLPIFL 383
           LP ST  +SGS   L +HLP  L
Sbjct: 367 LPTST--YSGSPTELPKHLPTSL 387


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 421 SLTITVSKLGVIFVYAVGMSCSYATNQ 501
           SL   VSK GV+FV  VG S     N+
Sbjct: 304 SLAKAVSKNGVLFVGLVGNSAVGCWNE 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,008
Number of Sequences: 438
Number of extensions: 5832
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)