Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0417
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.64
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 1.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 4.5
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 6.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.0
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 7.9
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 0.64
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 60 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQE 218
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEK 916
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 229 PSAFSWISSTEGVFSGESARRGTGTPTGSASITSYARPPFDISWQRIS 86
P A S + STE V S + T + +GSA I S+ + ++SW I+
Sbjct: 1135 PEAVSELMSTEVVLSIDRIFTQTSSLSGSA-IVSFFKALCEVSWDEIT 1181
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 357 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
E L K+++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 9 SSDAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 131
S D L L R + +E E ++ +C E K L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +3
Query: 330 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTR 464
T N I++ + + + HEE + ELR++++++++ E+ +
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQK 129
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -3
Query: 226 SAFSWISSTEGVFSGESARRGTGTPTGSASITSYARPPFDISWQRISVDLVSTSMASTFN 47
S+F+ SS+ S T T TG+ S T + PPF + I + S+ + T +
Sbjct: 310 SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSS 369
Query: 46 RQRLRTS*TASD 11
T+ TAS+
Sbjct: 370 NSSYTTTLTASN 381
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -3
Query: 232 LPSAFSWISSTEGVFSGESARRGTG---TPTGSASITSYARPPFDISWQRISVDLVSTSM 62
+PS+ S +S+ ++ T T TG+ S T + PPF + I + S+
Sbjct: 359 VPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVS 418
Query: 61 ASTFNRQRLRTS*TASD 11
+ T + T+ TAS+
Sbjct: 419 SFTSSNSSYTTTLTASN 435
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 348 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
A +E + ++E +EA +NE R L+ LEG ++ L++
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQE 48
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 342 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK 458
I+A + L A+ E +E+ E +NE R+K+ E +K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQK 1630
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 132 VILAEPVGVPVPRRADSPEKTPSVEEI 212
V L +P+ P P A+S + T S E++
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDV 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,642
Number of Sequences: 5004
Number of extensions: 21629
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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