Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0417
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 32 0.21
11_06_0289 - 21969248-21973516 32 0.28
11_06_0185 + 21018045-21022307 32 0.28
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 1.1
09_06_0350 + 22461592-22461935,22462788-22462867,22463171-224632... 29 2.0
02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250 29 2.6
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 2.6
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 6.0
12_01_0963 + 9608858-9609538 27 6.0
08_01_0056 + 379270-379803 27 6.0
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 6.0
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 6.0
07_03_1364 + 26044559-26044672,26045732-26046334 27 7.9
>07_01_0463 + 3502708-3503535
Length = 275
Score = 32.3 bits (70), Expect = 0.21
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = +3
Query: 324 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQ 482
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEK 233
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 357 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQ 427
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 357 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQ 427
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 293 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 436
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>09_06_0350 +
22461592-22461935,22462788-22462867,22463171-22463273,
22463423-22463501,22464208-22464292,22464639-22464685,
22465217-22465375
Length = 298
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 229 PSAFSWISSTEGVFSGESARRGTGTPTGSAS 137
PS FSW S+ + V +G SA T TG++S
Sbjct: 11 PSGFSWASTADQVTAGLSAAGLTAIVTGASS 41
>02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250
Length = 207
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 464 PGLLNTLKMILETGAQLVDVGLAFFLVGLHLGVESLL 354
PGL+ TLKM GA VG GL++GVE L+
Sbjct: 143 PGLIRTLKMCGSYGATFAAVG------GLYIGVEQLV 173
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 318 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 452
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 232 LPSAFSWISSTEGVFSGESARRGTGTPTGSASITSYARPPFDISWQRIS 86
+ + FS +SS G S S+ G + S+SIT+ PF S Q S
Sbjct: 717 ITAPFSTVSSLAGGSSSPSSMIFAGATSQSSSITTSGSVPFQFSSQSSS 765
>12_01_0963 + 9608858-9609538
Length = 226
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 341 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 451
HRRHQGG RR PR + R A + + G GC
Sbjct: 183 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 215
>08_01_0056 + 379270-379803
Length = 177
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 341 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 451
HRRHQGG RR PR + R A + + G GC
Sbjct: 134 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 166
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 269 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDP 385
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 333 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 440
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
>07_03_1364 + 26044559-26044672,26045732-26046334
Length = 238
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 294 WPSSEQWRPSY 262
WPS E+WRP Y
Sbjct: 68 WPSYEEWRPEY 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,725
Number of Sequences: 37544
Number of extensions: 192350
Number of successful extensions: 745
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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