Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0417
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 37 0.010
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 32 0.22
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 28 3.5
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 4.6
SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05) 28 4.6
SB_16436| Best HMM Match : DUF765 (HMM E-Value=9.2) 28 4.6
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 27 6.1
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14) 27 6.1
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 27 6.1
SB_5971| Best HMM Match : ZF-HD_dimer (HMM E-Value=9.8) 27 6.1
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 8.1
>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
Length = 299
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 315 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
I EQ +E + KME +EKR++Y+ L++RL + VE+ R T+E+
Sbjct: 189 IAQEQIEQQSKLIEEKIMQKMEMTKEKRDSYMEALKTRLHEKSLDVEQKRQTMEE 243
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 36 SLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQ 215
S+ ++K+E + KS E ++ G++ E + SPEKTP++E+ +
Sbjct: 1223 SVSKIKMEEEKPSEKSLEESTISINGNGMSKE---GKDNTASKEENEQSPEKTPALEKSE 1279
Query: 216 EXAEGSRREE 245
E A+G + +E
Sbjct: 1280 ESADGKQSQE 1289
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 306 PPRSWPSSEQWRPSY 262
PP ++PSS+QW P+Y
Sbjct: 508 PPGAYPSSDQWIPAY 522
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 112 FDISWQRISVDLVSTSMASTFNRQRLRTS 26
+DI WQ ++++ ++ + NR+RL TS
Sbjct: 1447 YDILWQDVNIEKINQELLDFQNRRRLTTS 1475
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 229 PSAFSWISSTEGVFSGESARRGTGTPTGSASITSYARPP 113
P A +S + S E +RG+G+P S S+T PP
Sbjct: 27 PPASIRANSAQENISPEQGKRGSGSPKESESLTGKHSPP 65
>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
Length = 203
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT----PSVEEIQEXAEGSR 236
+E + +I C +K GL + + G P+PRRA P K SVE A+ +
Sbjct: 127 IERQGGKITCAHYNKLGLRVLLKPEKFEGKPIPRRAHPPSKLLPYYSSVEHRGYLADAEQ 186
Query: 237 REET*LE 257
E+ LE
Sbjct: 187 VEKARLE 193
>SB_16436| Best HMM Match : DUF765 (HMM E-Value=9.2)
Length = 129
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 397 ARPTSTSCAPVSRIILRVLRRPGXPWNS 480
ARPTS SC+P + VL RP W+S
Sbjct: 3 ARPTSNSCSPGDPL---VLERPPPRWSS 27
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 21 VQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRA--DSPEKT 194
+ ++ LC+L V+ +E KSTE E++ L ++ A A +PE+
Sbjct: 207 MDMIEQLCQLVVDMLEYHKKSTE--SLEIAMSQLNKRIVNARRNQAEAEASAPKQAPEEP 264
Query: 195 PSVEEIQEXAEGSRREE 245
+V E E A S E+
Sbjct: 265 ENVPEQHEKAPESDEEQ 281
>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
Length = 620
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +3
Query: 78 KSTEIRCQEMSKGGLAYEVI--LAEPVGV 158
K+TE++CQ +++GG+A + + E +GV
Sbjct: 202 KNTELQCQSINRGGVAKASVMYIVEDIGV 230
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 312 RIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQQ 482
R E+ N + + AL KM EE ELR RL+D E+ R LE+Q
Sbjct: 456 REEEERIRNMEESERLALQEKMRREEE-------ELRRRLEDQRRREEEERRVLEEQ 505
>SB_5971| Best HMM Match : ZF-HD_dimer (HMM E-Value=9.8)
Length = 216
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 120 LAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEXAEGSRR 239
L +VIL++ G+PV S + ++EE + + G+RR
Sbjct: 3 LEADVILSDSKGIPVMAHPPSTDSNLTLEEFLQTSLGARR 42
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 205 STEGVFSGESARRGTGTPTGSASITSYARPP 113
+ EGV SGESA + +P S+S+ PP
Sbjct: 1180 TAEGVPSGESAMSPSASPASSSSVQVTWSPP 1210
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 272 RHCSEDGQDRGGVPHPQR---ADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 436
R S+ ++R P+ +D+ HR G RR+ PR ++R R+ P +G
Sbjct: 409 RRLSQTQENRDSKFRPESDDPSDKNQHRERSPGHRRRSQSPRRRSRSPGHRSRSPRRG 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,949
Number of Sequences: 59808
Number of extensions: 194746
Number of successful extensions: 721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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