Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0417
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05900.1 68416.m00664 neurofilament protein-related similar t...    29   1.6  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   2.2  
At1g40133.1 68414.m04768 hypothetical protein                          29   2.2  
At5g61040.1 68418.m07660 expressed protein                             27   5.0  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   5.0  
At5g64870.1 68418.m08160 expressed protein                             27   6.6  
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi...    27   6.6  
At3g01780.1 68416.m00118 expressed protein est hit,                    27   6.6  
At2g36650.1 68415.m04495 expressed protein                             27   6.6  
At1g75490.1 68414.m08770 DRE-binding transcription factor, putat...    27   8.8  

>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 87  EIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEXAEGSRREET 248
           E +  ++S+     EV   EPV V   + A+  E+ P+VE + E  E   REET
Sbjct: 147 ETKIVDVSESTDEAEVQQVEPVDVQPVKDAEKAEEKPTVESVVE-EETKDREET 199


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 448
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 327 QTNNFIVATKEALDAKMETHEEKREAYINE 416
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 321 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 464
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 54  VEAMEVETKSTEIRCQEMSKGGLAYEV 134
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   SSDAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAE 146
           ++ AV L  +  + KVE M   T++ +++ + +SK  + YE  + E
Sbjct: 268 AAKAVALREAELQTKVEKMNALTRTEKLKAEFLSKASVEYETKVQE 313


>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor [GI:3168840];
           nearly identical to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 355

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 18  AVQLVRSLCRLK-VEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT 194
           A ++ + + R+K VE+ E + KS+++  + + +     E +           + D P   
Sbjct: 185 ATEIKKRIMRMKGVESAESDLKSSQVTVKGVFEPQKLVEYVYKRTGKHAAIMKIDPPPPP 244

Query: 195 PSVEEIQEXAEGSRREE 245
           P  EE    AEG ++EE
Sbjct: 245 PP-EEAAAAAEGEKKEE 260


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
 Frame = +3

Query: 39   LCRLKVEAMEVE-TKSTEIR----CQEMSKGGLAY------EVILAEPVGVPVPR----R 173
            +C+  V A E   TK  E      C +++ GG+ Y      +   AE + + + R    +
Sbjct: 1027 MCKFVVRASEASITKQIESDIQGWCDDLTDGGVEYMPEDEVKATAAEKLKISMERIALLK 1086

Query: 174  ADSPEKTPSVEEIQEXAEGSRREE 245
            A  P+KT  +EE  E  E    EE
Sbjct: 1087 AAQPKKTSKIEEESENEEEEEGEE 1110


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 315 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRXTLEQ 479
           +  +Q +N +   + A +   E H +   +    L  +LK  +EG EK +   E+
Sbjct: 311 LEDDQVDNALALMRVANEQHEENHHQHESSRRKRLMKKLKKWVEGNEKGKSKAEE 365


>At1g75490.1 68414.m08770 DRE-binding transcription factor, putative
           similar to DREB2A GB:BAA33794 GI:3738230 from
           [Arabidopsis thaliana] (Plant Cell 10 (8), 1391-1406
           (1998))
          Length = 197

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 187 SGESARRGTGTPTGSASITSYARPPFDISWQRISVDL 77
           +G  +   + +P  S  ++S  R   +ISW+ I+VDL
Sbjct: 112 TGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,155
Number of Sequences: 28952
Number of extensions: 130726
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)