Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0416
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   7.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.7  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   9.7  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    25   9.7  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 291  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG 416
            +D   Q+  +  + ++ + I    DL P     HNV+++T+G
Sbjct: 1460 VDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIG 1501


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 219 EASRSPTRKVLSIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGA 380
           + SR+ +   + + +D D  G  L+            Q   + ++PYGD NP A
Sbjct: 629 DKSRAKSEDGMPVKYDEDPLGENLV---ATSEPLKEAQKCLEKLLPYGDKNPSA 679


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 256 IESTFLVGDRLASQPVREALQYSLPF 179
           +E+ +  G+RL+S P  EAL  SL F
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRF 904


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +3

Query: 57  IRRASYRSTRLIFCLPTSVHQRVC----KLGINGH---GD*SESE 170
           +  AS RS+ L+FC+      +VC    KLGI+     G+ ++SE
Sbjct: 259 LEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSE 303


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 296 IY*SPSCCIHIPANREYFPGGRPTGFS 216
           +Y + S C+     R +F GGR TGF+
Sbjct: 47  MYKTDSECVQAFGLRTHFGGGRSTGFA 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,584
Number of Sequences: 5004
Number of extensions: 47206
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)