Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0416
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    30   1.9  
12_02_1233 + 27224219-27225607                                         29   4.3  
07_03_0861 + 22072041-22072789,22074065-22074164                       28   7.6  
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180...    28   7.6  

>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 257 NREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVTMAINA*FANSLMNR 108
           +R   PG  P GF+  AG  SVF  +S+   FTS+   +    A  L  R
Sbjct: 506 DRHLRPGAAPGGFAIPAGSLSVFLFLSI-LLFTSLNERVLVPAARRLTRR 554


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 291 IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG-RYRMLK 434
           IDE+C  + + P  TYS Y    G L    +    +R+     RYR++K
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFR--GSLYVHCQNNCVIRITIANHRYRIIK 255


>07_03_0861 + 22072041-22072789,22074065-22074164
          Length = 282

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 270 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRH 392
           D   RR+I +IC I+ ++PKQ +S+ ++ + +    GAR+ +
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEY 266


>03_01_0228 +
           1802038-1803265,1804207-1804245,1804638-1804783,
           1804891-1804958,1805045-1805147,1805287-1805400
          Length = 565

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 363 DLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISAXT 488
           +L P   R H++RVV +   R+  D    +I+ T  EISA T
Sbjct: 145 ELLPKLPRAHDLRVVLLESARLPGDSSDPRIVATIEEISATT 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,812
Number of Sequences: 37544
Number of extensions: 302015
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)