Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0416
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     28   5.9  

>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 228  RSPTRKVLSIGWDMDTTGRRLIDEICQIAAYTP 326
            R+P+R ++  GWD  +T +   DE C   +  P
Sbjct: 1024 RAPSRNIIGGGWDESSTWKDAFDEPCSTPSRLP 1056


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 66   HDECFKVILLL*NITXSQHXCG 1
            HD+ FKV L+L +   +QH CG
Sbjct: 1511 HDQLFKVFLVLLDFRVTQHQCG 1532


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 52   KTFVVHHTGLRGSYFVYQHLFINEFAN*ALMAMVTEVKV----NGSEMEANTEVPPALAE 219
            K F++H +  RG + V+Q++ IN      LMA +T  +     N S+ +  +EV   L +
Sbjct: 857  KEFILHASKRRGDFPVFQNVPINTKEGGVLMATITGSEALRIENQSDEDTRSEVMATLRQ 916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,018,710
Number of Sequences: 59808
Number of extensions: 352722
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)