Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0416
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 31 0.55
Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 29 3.9
U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF067216-3|AAC17525.1| 430|Caenorhabditis elegans Hypothetical ... 28 5.1
AF022974-8|AAX22288.1| 289|Caenorhabditis elegans Serpentine re... 28 6.8
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 273 TTGRRLIDEICQIAAYTPKQTY--SQYIMPYGD-----LNPGARRRHNVRV-VTVGRYRM 428
T+G+ ++IC I TP+ Y + +MP+ D +NP R V++ +T
Sbjct: 162 TSGKLKFNKICSIRVITPRPNYNPNDLVMPHSDDEEDTMNPNRERLSTVKLRLTPTSQAK 221
Query: 429 LKDMVSHKILKTKSEI 476
L+ M S + + +E+
Sbjct: 222 LEQMQSEDVFQFNAEM 237
>Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical
protein F08H9.8 protein.
Length = 381
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 248 YFPGGRPTGFSASAGGTSVFASISLPFTF 162
Y P + + S GGT VF S+S FTF
Sbjct: 46 YMPFSETSSYCQSLGGTQVFISLSYEFTF 74
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 57 IRRASYRSTRLIFCLPTSVHQRVCKLGINGHGD 155
+RRA R+++ + CL + ++C +N + D
Sbjct: 34 VRRAMQRNSKKVLCLSVKIDGKICHFTLNSNKD 66
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 57 IRRASYRSTRLIFCLPTSVHQRVCKLGINGHGD 155
+RRA R+++ + CL + ++C +N + D
Sbjct: 98 VRRAMQRNSKKVLCLSVKIDGKICHFTLNSNKD 130
>U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical
protein C55C3.4 protein.
Length = 431
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 143 INA*FANSLMNRCW*TKYEPRRPV 72
+N FA ++ +CW KYE R P+
Sbjct: 346 VNKEFAEFILTKCWPEKYEDRLPM 369
>AF067216-3|AAC17525.1| 430|Caenorhabditis elegans Hypothetical
protein C35E7.10a protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 143 INA*FANSLMNRCW*TKYEPRRPV 72
+N FA ++ +CW KYE R P+
Sbjct: 346 VNKEFAEFILTKCWPEKYEDRLPM 369
>AF022974-8|AAX22288.1| 289|Caenorhabditis elegans Serpentine
receptor, class sx protein10 protein.
Length = 289
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 561 SVLQCFLXAFTRYXLFGSV 617
SVLQCF AF + LFGS+
Sbjct: 44 SVLQCFQCAFHIFCLFGSI 62
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 258 GWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRV 404
G+D+ TTG L + C ++ +T S Y +N R+R VR+
Sbjct: 453 GFDLTTTGDTLFECECGFKSWNGNRTASHYHKCRRSINDIERKREIVRL 501
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 258 GWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRV 404
G+D+ TTG L + C ++ +T S Y +N R+R VR+
Sbjct: 450 GFDLTTTGDTLFECECGFKSWNGNRTASHYHKCRRSINDIERKREIVRL 498
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 258 GWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRV 404
G+D+ TTG L + C ++ +T S Y +N R+R VR+
Sbjct: 451 GFDLTTTGDTLFECECGFKSWNGNRTASHYHKCRRSINDIERKREIVRL 499
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,024
Number of Sequences: 27780
Number of extensions: 264199
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -