Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0416
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 50  LKHSSCIIPVYAAHILFTNICSSTSLQI 133
           L  +S ++P+ A ++LFT I ++ S+ +
Sbjct: 286 LPPTSLVLPLIAKYLLFTFIMNTVSILV 313


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 248 YFPGGRPTGFSASAGGTSVFAS 183
           +FPGG+ T F  S G   + A+
Sbjct: 244 FFPGGKKTTFFESCGVADLIAT 265


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 243 KVLSIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN 371
           K++   ++ +TT + +  ++C    YT  Q   +  + + DL+
Sbjct: 557 KLVQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMKNPIEFTDLS 599


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 157 QSPWPLMPNL 128
           QSP+PL PNL
Sbjct: 650 QSPFPLPPNL 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,049
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)