Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0415
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   3.8  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   8.8  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    24   8.8  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   8.8  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 269 VLDHASAKVIQIHQN*RLRTRGPPSIGFDLIKALIP 162
           ++D    K   IH +  L  +  PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 58  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 162
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 227  FDESG*LLQTHGQVPATHLSNVCL 298
            F+E G L QT  +V  T LS VCL
Sbjct: 939  FEEKGMLGQTPPEVLRTALSQVCL 962


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 58  NGSIYQFWFLRSYSVTWITVVILEL 132
           NG + +F+FL S ++ W+   +LE+
Sbjct: 22  NGKMKEFFFLVSETMDWLNEHMLEV 46


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 269 VLDHASAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVL 144
           VLD A   + ++  N    TRG PS+   L +A  P   R L
Sbjct: 50  VLDAAKKSIDEVACNQYSHTRGRPSLRKALSEAYSPYFKRTL 91


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 96  LSYLDNCGNSRANTC 140
           ++YLD   NSR NTC
Sbjct: 75  VNYLDETPNSRYNTC 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,951
Number of Sequences: 5004
Number of extensions: 27182
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)