Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0415
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 27   4.9  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 27   4.9  
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    27   6.4  
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                27   6.4  
SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 371 PESNPDSPLPVTTM 330
           PESNP+SP PV TM
Sbjct: 115 PESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 371 PESNPDSPLPVTTM 330
           PESNP+SP PV TM
Sbjct: 59  PESNPNSPSPVVTM 72


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 185  QNQSTEGLASEVVNFDESG*LLQTHGQVPATHLSN 289
            Q  S +GL+   ++ DE   L QTH  VP+TH+++
Sbjct: 6329 QRDSKQGLS---ISPDEYARLKQTHEDVPSTHVNS 6360


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 125
           L D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 451 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 49  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 165
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 125
           L D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 870 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   AQRLSHACLSASRIKAIPRMA 64
           +QRLSHACLS S      RMA
Sbjct: 141 SQRLSHACLSISTCTVKLRMA 161


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 240 PDSSKLTTSDARPSVDWF*SNKSTHPITGQS 148
           PDS+ L   D   S +WF  N S  P TG +
Sbjct: 627 PDSAHLRREDTSKSAEWF--NMSFEPETGSN 655


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 10  IKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 186
           +KPC S   P      + +++        +VT+   V  + IH  R TL+SD M A   S
Sbjct: 35  LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91

Query: 187 KPIDG 201
           +P+DG
Sbjct: 92  RPLDG 96


>SB_18789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 293 RHLKDASPVLDHASAKVIQIHQN 225
           RH   AS  LDHA++  +++H+N
Sbjct: 274 RHPLKASAFLDHAASMGVRVHRN 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,276
Number of Sequences: 59808
Number of extensions: 209310
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)