Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0415
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.43 
At4g38560.1 68417.m05459 expressed protein                             27   5.3  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   5.3  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   7.0  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    26   7.0  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 237 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 142
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  GDTANGSIYQFWFLRSYSVTWITVVILEL 132
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -1

Query: 275 SPVLDHASAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 105
           S +L   + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 301 SALLTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 209 RGPPSIGFDLIKALIPSLVRVL 144
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 LMNLDNFCRRMVKYRRRIFQMSALSTFDGSFCDYHG 335
           ++  DN    +  Y  R+FQ+  L T   SF   HG
Sbjct: 773 VLEYDNIYEDITSYIYRVFQIYGLKTLVKSFLPRHG 808


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,942,188
Number of Sequences: 28952
Number of extensions: 142686
Number of successful extensions: 295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)