Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0414
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    29   0.21 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   0.65 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   4.6  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   4.6  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    24   6.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   8.0  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   8.0  

>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 255 KIVSVDLSPEWPEKRCILTGAADGTVKQWL 344
           +IV++D +    ++R ++TG+ DGT+K WL
Sbjct: 105 EIVAIDTNTV--DRRIVVTGSWDGTIKLWL 132


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 288 PEKRCILTGAADGTVKQW 341
           P KR I T ++DGT+K W
Sbjct: 64  PNKRWIATSSSDGTIKIW 81


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 282  EWPEKRCILTGAADGTVKQW 341
            EW  K   +TG  DG ++ W
Sbjct: 2446 EWLHKNLFITGHPDGIIRIW 2465


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 258 IVSVDLSPEWPEKRCILTGAADGTVKQWLI 347
           ++SV +SP+    R +++G+ D T+K W I
Sbjct: 108 VLSVSISPD---NRQVVSGSRDKTIKIWNI 134


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 145 YRRANHLSKLLGQILETNSVKETILIHPF 59
           +++AN L+ L G  +    V ET L+H F
Sbjct: 46  FKKANELALLTGSEVMVLVVSETGLVHTF 74


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 48  IINRNG*ISIVSFTELVSSIWPS 116
           ++N NG I +  F E+    WP+
Sbjct: 155 LLNENGPIQLPDFCEVFDRAWPT 177


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -3

Query: 321 QQHLLGYISSLAILVIGQ----HLQFFIMSSIPKMYTVRLL*INDTVIVFEGFYNTKTF 157
           QQH LG++S+L+ +V+ +     ++  I+ ++ K+   R+   N  VI+     N+ TF
Sbjct: 687 QQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRI--PNLKVILMSATVNSDTF 743


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 282 EW-PEKRCILTGAADGTVKQW 341
           +W P+    +TG +DG VK W
Sbjct: 553 QWQPKGNLFVTGGSDGIVKVW 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,724
Number of Sequences: 5004
Number of extensions: 29899
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)