Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0414
(356 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13) 30 0.64
SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 28 2.6
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1) 27 3.4
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 27 3.4
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_1302| Best HMM Match : PAP2 (HMM E-Value=0.018) 27 4.5
SB_21822| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 27 5.9
SB_27006| Best HMM Match : E-MAP-115 (HMM E-Value=2.3) 27 5.9
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07) 26 7.8
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
>SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)
Length = 242
Score = 29.9 bits (64), Expect = 0.64
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLITN 353
P KR ++TGA DG+VK W N
Sbjct: 41 PSKRRLVTGARDGSVKIWNFNN 62
>SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 29.5 bits (63), Expect = 0.84
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 76 LFPSPNWFQVSGLAISKDGWLVYSGPGKSLCI 171
L PSPNWF +S LAI+ G +++ P LCI
Sbjct: 128 LQPSPNWFFLS-LAIADFGVGLFTTPFHMLCI 158
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 199 VIDSKQPYCVHFWNRAHNEKL*VLTYHQN 285
V + C H W+R KL LT HQN
Sbjct: 450 VASGAEDSCAHVWDRHFGVKLATLTGHQN 478
>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
Length = 415
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 310 VRIHLFSGHSGDRSTLTIFHYELYSKNVHSTAALNQ*HCYS 188
V IH ++G + T H +Y+KN+ + ++Q H Y+
Sbjct: 316 VCIHQKHSYTGLYTPRTFLHVSVYTKNIPTRVCIHQKHPYT 356
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 313 PVRIHLFSGHSGDR--STLTIFHYELYSKNVHSTAALNQ*HCYS 188
P R+ + H R + T H +Y+KN+ + ++Q H Y+
Sbjct: 127 PTRVCIHQKHPYTRLYTPRTFLHVSVYTKNISTRVCIHQKHPYT 170
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQW 341
PE ILTG+ DGTV+ W
Sbjct: 137 PELPIILTGSEDGTVRVW 154
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 58 EMDESVLFPSPNWFQVSGLAISKDGWL-VYSGPGKSLCIVEPLKNYNSV 201
E+DE ++ PN F I + +L V S + E L+NYN V
Sbjct: 2913 ELDEEAMYAKPNMFSHFSSGIGEPKYLAVPDWEVLSKLLTEALENYNEV 2961
>SB_1302| Best HMM Match : PAP2 (HMM E-Value=0.018)
Length = 274
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 67 ESVLFPSPNWFQVSGLAISKDGWLVYSGPGKSLCIVEPLKNY--NSVIDSKQPYCVHFWN 240
+S L PS WF+ + + + ++ + +P +N+ + +CV+FW
Sbjct: 150 DSTLIPSVMWFEYTQSRV-ETRYISKNSSSNLFSTYKPARNFLCQKGLGMVVHFCVYFWG 208
Query: 241 RAHNEKL-*VLTYH 279
+ E L V+T H
Sbjct: 209 NVNGEVLTTVITSH 222
>SB_21822| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 307
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 340 HCLTVPSAAPVRIHLFSGHSGDRSTLTIFHY 248
HC+ V+ HL+S S +++T+ +F +
Sbjct: 257 HCIEPDEDGFVKCHLYSSQSAEQATVDVFPF 287
>SB_27006| Best HMM Match : E-MAP-115 (HMM E-Value=2.3)
Length = 306
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 340 HCLTVPSAAPVRIHLFSGHSGDRSTLTIFHY 248
HC+ V+ HL+S S +++T+ +F +
Sbjct: 257 HCIEPDEDGFVKCHLYSSQSAEQATVDVFPF 287
>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
Length = 729
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 229 HFWNRAHNEKL*VLTYHQNGQRRDV 303
HFWNR H E L +L+ + +V
Sbjct: 651 HFWNRQHKECLHILSIRHIWMKEEV 675
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQW 341
P+ + I+TG ADG+++ W
Sbjct: 716 PDTKKIITGGADGSIRVW 733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,396
Number of Sequences: 59808
Number of extensions: 203477
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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