Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0414
(356 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 27 2.8
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 27 2.8
At5g63520.1 68418.m07973 F-box family protein similar to unknown... 27 3.7
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 27 4.9
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 4.9
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 4.9
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 4.9
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 27 4.9
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 27 4.9
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 26 6.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 6.4
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 26 8.5
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 26 8.5
At3g10750.1 68416.m01294 hypothetical protein 26 8.5
At2g37035.1 68415.m04543 expressed protein 26 8.5
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 26 8.5
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 26 8.5
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 26 8.5
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQW 341
P++ C+LT + DGT++ W
Sbjct: 280 PKEDCMLTSSVDGTIRVW 297
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 291 EKRCILTGAADGTVKQWLITN 353
+ I+TG+ DG++KQW I N
Sbjct: 266 DSHTIVTGSTDGSLKQWDIDN 286
>At5g63520.1 68418.m07973 F-box family protein similar to unknown
protein (pir||S76033) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 572
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -3
Query: 315 HLLGYISSLAILVIGQHLQFFIMSSIPKMYTVRLL*INDTVIVFEGFYNTKTFSRPAIDE 136
H L Y +++G + F+ + V+L D + V G + RPA
Sbjct: 249 HKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQLQ--KDDIRVLAGLIFARDRHRPARKF 306
Query: 135 PTIFRNC*ARYLKPIR 88
P I +C A Y+ PI+
Sbjct: 307 PCIVLSCCAGYVFPIK 322
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 103 VSGLAISKDGWLVYS 147
VSGLA+S+DG L+YS
Sbjct: 168 VSGLALSRDGTLLYS 182
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
PE I+TG+ DGTV+ W T
Sbjct: 239 PELPIIITGSEDGTVRIWHAT 259
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
PE I+TG+ DGTV+ W T
Sbjct: 239 PELPIIITGSEDGTVRIWHAT 259
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
PE I+TG+ DGTV+ W T
Sbjct: 239 PELPIIITGSEDGTVRIWHAT 259
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
PE I+TG+ DGTV+ W T
Sbjct: 239 PELPIIITGSEDGTVRIWHAT 259
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
PE I+TG+ DGTV+ W T
Sbjct: 239 PELPIIITGSEDGTVRIWHAT 259
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLITN 353
P+ + +L+G+ DGT+ W I N
Sbjct: 254 PDGKYVLSGSGDGTLHAWNIEN 275
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 127 DGWLVYSGPGKSLCIVEPLKNY 192
D W V SGPG+S P +NY
Sbjct: 151 DSWTVDSGPGRSRVDDGPSRNY 172
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 303 ILTGAADGTVKQW 341
+ TG+ADGTVK W
Sbjct: 291 VFTGSADGTVKVW 303
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 303 ILTGAADGTVKQW 341
+ TG+ADGTVK W
Sbjct: 267 VFTGSADGTVKVW 279
>At3g10750.1 68416.m01294 hypothetical protein
Length = 299
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 145 SGPGKSLCIVEPLKNYNSVIDS 210
+G G+SL I P NY S+IDS
Sbjct: 171 NGSGRSLVIDSPGLNYLSIIDS 192
>At2g37035.1 68415.m04543 expressed protein
Length = 433
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 207 INDTVIVFEGFYNTKTFSRPAID 139
IN T + GF + FSRP ID
Sbjct: 132 INATTVFLSGFESISGFSRPIID 154
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 288 PEKRCILTGAADGTVKQWLIT 350
P+ + + TG DG VK W IT
Sbjct: 208 PDGKYLATGGEDGVVKIWRIT 228
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 303 ILTGAADGTVKQW 341
+ TG+ADGTVK W
Sbjct: 190 VFTGSADGTVKVW 202
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 103 VSGLAISKDGWLVYSGP-GKSLCIVEPLKN 189
V+ LAIS+DG ++YSG +S+ + E L N
Sbjct: 281 VNALAISEDGKVLYSGACDRSILVWERLIN 310
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,006
Number of Sequences: 28952
Number of extensions: 145147
Number of successful extensions: 389
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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