Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0413
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.19 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.44 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.76 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.76 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   3.1  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   3.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   3.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   3.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   4.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   7.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   7.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    20   9.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   9.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 285 IPPANNPPSPEVHH-LHSALAEEPALRFQPRFR*VHYSLSLVCMVH 151
           +P   NPPS ++HH +H  +      R   R R V YS  +  + H
Sbjct: 31  LPRHFNPPSDKLHHPIHQTVIYHNNPRDPNRARSVSYSTVIQSVPH 76


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 135 VTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGG 248
           VT   SG  + G  NNVPS     NG+ +  P  + GG
Sbjct: 61  VTTLASGSSLNGLTNNVPS-----NGLSSSGPFSSIGG 93


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 289 WHSPSKQSTEPRGAPPPFCIGGGACTPFPATVPLGT 182
           WH+PS     P         G G  +P+P+ +P+ T
Sbjct: 188 WHTPSMYPLSP---------GAGFRSPYPSALPIST 214


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 289 WHSPSKQSTEPRGAPPPFCIGGGACTPFPATVPLGT 182
           WH+PS     P         G G  +P+P+ +P+ T
Sbjct: 80  WHTPSMYPLSP---------GAGFRSPYPSALPIST 106


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 126 KKTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPP 227
           K   T  K G ++P K  +    T   +  +APP
Sbjct: 425 KPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPP 458


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 318 PANFPVGRSFGIPPANNPPSP 256
           P    VG SFG+    + PSP
Sbjct: 245 PGAQTVGASFGLHATGSAPSP 265



 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 220 ACTPFPATVPLGTLFTFPG 164
           +C+  P T   G+   FPG
Sbjct: 104 SCSSVPTTASYGSDLYFPG 122


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 258 GSVDCLLGECQSYGLQGNXQVQHQMAKLGQMFHGIXH 368
           GS+  L G  Q Y   G       + K+G   H I H
Sbjct: 79  GSILALFGVVQIYIFSGFIVPSGVVYKIGYWLHQICH 115


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 204 GNGVQAPPPMQNGGGAPLG 260
           G G+  P P  N   AP G
Sbjct: 12  GGGLMPPQPYMNAQDAPAG 30


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 336 WPFGVEPANFPVGRSFGIPPANNPPSPE 253
           +PF     N   G   G   AN PPSP+
Sbjct: 74  YPFRPMHQNSYTGYHLGSYAANCPPSPK 101


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 148 LSTVTVFFNLAPCLIE 101
           LS VT+FFN A   +E
Sbjct: 65  LSIVTIFFNFATKKLE 80


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 267 PPSPEVHHLHSALAEEPALRFQPRFR 190
           PP  EV+     L  +PA+ + P +R
Sbjct: 232 PPQLEVNERKENLTCQPAVPYVPFYR 257


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 267 DCLLGECQSYGLQGNXQVQ 323
           DC+    Q Y  +G+ +VQ
Sbjct: 580 DCVAKNSQGYSARGSLEVQ 598


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 263 RAQRCTTSILHWRRSLHSV 207
           R QRC   ++  RRSL  V
Sbjct: 182 RLQRCPAMLVFDRRSLRCV 200


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +3

Query: 144 DKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGGAP 254
           ++S P  P       S +   +   APPP     G+P
Sbjct: 8   EESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSP 44



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 277 SKQSTEPRGAPPPFCIGGGA 218
           S   T P  APPP     G+
Sbjct: 24  SSGMTSPAAAPPPATTSSGS 43


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 133 P*QWTKVDHTYQG 171
           P +W K+ H Y G
Sbjct: 100 PKEWNKILHQYAG 112


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 297 RSFGIPPANNPPSPEVHHLHSALAEEP 217
           RSF +    +P +   HH H   A  P
Sbjct: 37  RSFPLSLGMSPYASSQHHHHHLQARPP 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,592
Number of Sequences: 336
Number of extensions: 2407
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)