Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0413
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    40   9e-05
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    40   9e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   0.94 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   2.2  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   6.7  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    24   6.7  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   8.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   8.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 40.3 bits (90), Expect = 9e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +3

Query: 81   DRNALLSSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSG 194
            DR+ALL  I  G +LKKTVT DKS P I G+V +   G
Sbjct: 1748 DRSALLQQIHTGTRLKKTVTTDKSKP-IAGRVLDASDG 1784


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 40.3 bits (90), Expect = 9e-05
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +2

Query: 212 SAGSSANAEWRWCTSGLGGLFAGGMPKLRPTGKXAGS 322
           S+ ++  AE R     LGGLFAGGMPKLR  GK + S
Sbjct: 85  SSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSAS 121



 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 81  DRNALLSSIRQGAKLKKTVTVDKSGPYIPGKV 176
           DR+ALL+SI++G KLKK  T D+S P + G V
Sbjct: 27  DRSALLNSIQKGKKLKKATTNDRSAPVVGGGV 58


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 108 RQGAKLKKTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPP 227
           +Q A     +   ++ P+IPG    +P  T A  GV  PP
Sbjct: 468 QQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPP 507



 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -3

Query: 280 PSKQSTEPRGAPPPFCIGGGACTPFPATVPLGTLFTFPGMYGP 152
           P+   ++P   PP   +  G   PFP    +  +   PG   P
Sbjct: 515 PNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 280 PSKQSTEPRGAPPPFCIGGGACTPFPATVPL 188
           PS   + P  APP   +G  A  P P + P+
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 285 IPPANNPPSPEVHHLHSAL 229
           +PP  +PPS E   LHSAL
Sbjct: 9   VPPPKDPPSYEEVALHSAL 27


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 354 GTSVLTWPFGVEPANFPVGRSFGIPPANNPPSP 256
           G ++ TWP+ +E  +     +  +   +NPP+P
Sbjct: 153 GYAMDTWPYSLEEVSRIARLAAWLAETSNPPAP 185


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 226 GGACTPFPATVPLGTLFTFPGMYGPL 149
           GGA T F   +P  T+F+  G+Y  +
Sbjct: 236 GGAGTVFKGFLPSSTVFSREGLYSSI 261


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 279 PANNPPSPEVHHLHSALAEEPALRF 205
           PANN     +H L   +A+E AL F
Sbjct: 124 PANNSKLDPLHRLLQIVAQEDALPF 148


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 336 WPFGVEPANFPVGRSFGIPPANN 268
           W   +  +N P+G + G P +NN
Sbjct: 785 WVTELSSSNIPLGHALGNPESNN 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,972
Number of Sequences: 5004
Number of extensions: 34773
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)